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18232104,17401373,16356665,17893677,15383676,22940442,27665594,20827539,17381319,16458514,27144897,18565984,24827614,16957370,30963486,23485825,15317971,17381336,14691535,12672692,17720479,15013811,21436120,21422073,22041293,22575504,18824511,20502318,15610845,19375315,24803672,23703212,17174894,15928346,18463285,14709173,17254305,15943864,26608597,26510603,24639172,28185545,17507929,16849698,23007516,27207881,20637886,15217813,24058689,23863844,30286781,22307238,16477010,18229676,18050425,23192603,18955434,12747828,18023351,15738385,31584932,25240886,12844358,17895987,21953484,28540682,11679672,15987789,23007502,15247332,25858286,27117456,24606011,23417009,19160516,27122020,23161250,19131968,22722835,27720646,17504030,15502875,22118279,24127635,21531769,19091027,16122423,25805859,30012015,19336450,27521456,17612493,25550422,18042455,25414126,28621414,26086375,30005074,22692086,15131085,22855835,30963484,18507836,23007505,17350973,24601753,17877811,21149264,23194271,23680784,26081559,28362846,22664914,15215366,27044644,17989254,17890240,16274478,24375960,22910526,24564489,17996040,25708359,17555584,27189995,25036161,20062054,19706460,23929865,25274109,24839022,27031951,20144220,17299129,17637574,24272439,26438165,17205120,25948580,17189346,28540680,33035346,17504028,27986855,20660479,21194446,23074262,17697356,18043761,23335364,28482037,15453917,19767416,23703208,25914300,15755320,19734881,31744903,22908890,19675127,26267216,14697198,22503424,28473452,26432829,25201113,17726534,11679671,16764537,19435500,22836911,21674004,24875477,25077573,20177143,27903911,30919453,22915600,25383673,23874542,20805242,21605702,23475422,21390282,19478946,25614300,29985341,28148562,29959680,22064465,15014042,19155321,18981266,23007495,24272436,26089388,23175680,23592263,23696004,30963501,25055920,26232411,19420057,21551220,27123865,25135674,28385564,19286629,24600049,31456135,25787233,18296482,29435938,22499947,28180294,25628353,25054916,23535236,17465886,26578591,19196098,23716633,26614662,25715848,25055918,17456015,24480175,21920301,20860840,18085825,37108126,26589932,22384176,24001276,20700506,24857550,20529892,18665242,21307183,23864354,18155131,22836127,28515145,16921378,25002673,20835247,17331257,24178030,19182800,19059941,21402938,24859534,22454234,24632500,22928468,24054564,18812516,23777576,29511046,24025793,24292936,22832108,20937476,27256381,28430005,19578934,21177969,26130578,15585662,24629056,16099838,31180351,19789267,22152485,27776116,25863133,26360131,15337849,24034728,16540699,28439831,23709495,25492647,21909094,19468042,21177960,25378301,18952845,25467838,31504780,20977776,26037721,31268608,12769849,28111013,27899600,19808883,25319664,23011932,20924405,26662994,16845048,23139801,18333757,18621012,27154969,15652477,24565017,25641166,28132651,23007501,29934631,28552033,18768978,24372038,17465893,17989255,20233390,25092828,18810654,22077698,17553836,31601146,20576699,23671676,31538617,25559987,20213505,21318233,28323040,24598260,28728902,26738292,30598118,27140965,23174671,25416803,17255198,20071740,24885295,29549628,25380780,23200141,26934338,20012966,29795674,33340693,30953728,26825463,19765283,23501016,25815862,19691855,17683260,20703300,24416147,20122191,21755474,30147022,25896062,21335607,34432280,29897601,23173580,24267917,26837572,29314553,20619301,24077390,20729470,28439832,24080764,36980936,36352212,22439011,30339041,22285563,25471818,25824005,11081512,27421013,21602264,18776931,30097004,17341314,22994623,21342132,18684810,28439836,18376413,25053842,22923300,18614752,18725951,20805289,25535920,21622958,32227657,27756204,18818519,28973447,20509939,27627961,26051695,18342023,16373484,31969530,19358699,24510721,29028911,26306531,27807838,26559864,19406924,32652041,25238537,29868708,16355253,27703979,29410437,24614909,18158132,23049969,21791068,20415587,20809528,19405940,20808284,23369080,19106630,29290807,18199046,22343717,27170328,21652644,26967326,30335862,34417449,26928172,18996891,25407126,26612864,35627185,22348024,25243165,27175225,23034802,30040648,24862384,25423301,16043502,28811507,18184361,29435919,17389647,25683051,20533884,21121024,22957063,22963870,25977294,29483647,24149053,23353823,25359968,32820039,23367188,18688270,30142196,24091407,28219439,23948551,24163105,23139167,23200135,16543277,12711694,24590801,21828269,29764374,29126174,35984027,30963491,23815553,29196609,20686687,28274175,21431713,21627036,23648690,21212805,23019592,16990141,34677573,20380813,19415117,30123182,28010188,25500006,18648548,36352217,27438777,24755363,24282594,24639170,15723116,26839153,24707827,23737738,25527098,16854211,30573696,32938407,23326485,21528457,19478854,21957473,23882112,29030842,25580537,16140786,27857164,24096364,22393361,22134127,35679295,36609461,25576498,24756070,28738777,21441577,16393143,31443043,27058298,24831544,14970384,20860814,26577378,32186709,22950798,24513234,29749304,30457469,12007417,30900502,17465885,24304892,20020507,22705797,30200613,16786435,28639193,35301300,30919506,21624898,23591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Analysis of microRNA-target interactions by a target structure based hybridization model.

Long D, Chan CY, Ding Y. Long D, et al. Pac Symp Biocomput. 2008:64-74. Pac Symp Biocomput. 2008. PMID: 18232104 Free article.

Potent effect of target structure on microRNA function.

Long D, Lee R, Williams P, Chan CY, Ambros V, Ding Y. Long D, et al. Nat Struct Mol Biol. 2007 Apr;14(4):287-94. doi: 10.1038/nsmb1226. Epub 2007 Apr 1. Nat Struct Mol Biol. 2007. PMID: 17401373

Computational analysis of microRNA targets in Caenorhabditis elegans.

Watanabe Y, Yachie N, Numata K, Saito R, Kanai A, Tomita M. Watanabe Y, et al. Gene. 2006 Jan 3;365:2-10. doi: 10.1016/j.gene.2005.09.035. Epub 2005 Dec 13. Gene. 2006. PMID: 16356665

The role of site accessibility in microRNA target recognition.

Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E. Kertesz M, et al. Nat Genet. 2007 Oct;39(10):1278-84. doi: 10.1038/ng2135. Epub 2007 Sep 23. Nat Genet. 2007. PMID: 17893677

Fast and effective prediction of microRNA/target duplexes.

Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R. Rehmsmeier M, et al. RNA. 2004 Oct;10(10):1507-17. doi: 10.1261/rna.5248604. RNA. 2004. PMID: 15383676 Free PMC article.

miRNA_Targets: a database for miRNA target predictions in coding and non-coding regions of mRNAs.

Kumar A, Wong AK, Tizard ML, Moore RJ, Lefèvre C. Kumar A, et al. Genomics. 2012 Dec;100(6):352-6. doi: 10.1016/j.ygeno.2012.08.006. Epub 2012 Aug 25. Genomics. 2012. PMID: 22940442 Free article.

STarMir Tools for Prediction of microRNA Binding Sites.

Kanoria S, Rennie W, Liu C, Carmack CS, Lu J, Ding Y. Kanoria S, et al. Methods Mol Biol. 2016;1490:73-82. doi: 10.1007/978-1-4939-6433-8_6. Methods Mol Biol. 2016. PMID: 27665594 Free PMC article.

Solution structure of miRNA:mRNA complex.

Cevec M, Plavec J. Cevec M, et al. Methods Mol Biol. 2010;667:251-65. doi: 10.1007/978-1-60761-811-9_17. Methods Mol Biol. 2010. PMID: 20827539

Positive and negative modulation of viral and cellular mRNAs by liver-specific microRNA miR-122.

Jopling CL, Norman KL, Sarnow P. Jopling CL, et al. Cold Spring Harb Symp Quant Biol. 2006;71:369-76. doi: 10.1101/sqb.2006.71.022. Cold Spring Harb Symp Quant Biol. 2006. PMID: 17381319 Review.

A genome-wide map of conserved microRNA targets in C. elegans.

Lall S, Grün D, Krek A, Chen K, Wang YL, Dewey CN, Sood P, Colombo T, Bray N, Macmenamin P, Kao HL, Gunsalus KC, Pachter L, Piano F, Rajewsky N. Lall S, et al. Curr Biol. 2006 Mar 7;16(5):460-71. doi: 10.1016/j.cub.2006.01.050. Epub 2006 Feb 2. Curr Biol. 2006. PMID: 16458514 Free article.

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