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Results: 1 to 20 of 618

1.

PlantGDB: a resource for comparative plant genomics.

Duvick J, Fu A, Muppirala U, Sabharwal M, Wilkerson MD, Lawrence CJ, Lushbough C, Brendel V.

Nucleic Acids Res. 2008 Jan;36(Database issue):D959-65. Epub 2007 Dec 6.

PMID:
18063570
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

PlantGDB, plant genome database and analysis tools.

Dong Q, Schlueter SD, Brendel V.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D354-9.

PMID:
14681433
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Phytome: a platform for plant comparative genomics.

Hartmann S, Lu D, Phillips J, Vision TJ.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D724-30.

PMID:
16381967
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research.

Jung S, Jesudurai C, Staton M, Du Z, Ficklin S, Cho I, Abbott A, Tomkins J, Main D.

BMC Bioinformatics. 2004 Sep 9;5:130.

PMID:
15357877
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Brassica ASTRA: an integrated database for Brassica genomic research.

Love CG, Robinson AJ, Lim GA, Hopkins CJ, Batley J, Barker G, Spangenberg GC, Edwards D.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D656-9.

PMID:
15608282
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Comparative plant genomics resources at PlantGDB.

Dong Q, Lawrence CJ, Schlueter SD, Wilkerson MD, Kurtz S, Lushbough C, Brendel V.

Plant Physiol. 2005 Oct;139(2):610-8.

PMID:
16219921
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.

Schlueter SD, Dong Q, Brendel V.

Nucleic Acids Res. 2003 Jul 1;31(13):3597-600.

PMID:
12824374
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi.

Agüero F, Zheng W, Weatherly DB, Mendes P, Kissinger JC.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D428-31.

PMID:
16381904
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

yrGATE: a web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes.

Wilkerson MD, Schlueter SD, Brendel V.

Genome Biol. 2006;7(7):R58.

PMID:
16859520
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Brendel V, Xing L, Zhu W.

Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5.

PMID:
14764557
[PubMed - indexed for MEDLINE]
Free Article
11.

Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants.

Sparks ME, Brendel V.

Bioinformatics. 2005 Nov 1;21 Suppl 3:iii20-30.

PMID:
16306388
[PubMed - indexed for MEDLINE]
Free Article
12.

BGI-RIS V2.

He X, Wang J.

Methods Mol Biol. 2007;406:275-99.

PMID:
18287698
[PubMed - indexed for MEDLINE]
13.

The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists.

Yuan Q, Ouyang S, Liu J, Suh B, Cheung F, Sultana R, Lee D, Quackenbush J, Buell CR.

Nucleic Acids Res. 2003 Jan 1;31(1):229-33.

PMID:
12519988
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.

Castrignanò T, Rizzi R, Talamo IG, De Meo PD, Anselmo A, Bonizzoni P, Pesole G.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W440-3.

PMID:
16845044
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.

PMID:
19788737
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Tracembler--software for in-silico chromosome walking in unassembled genomes.

Dong Q, Wilkerson MD, Brendel V.

BMC Bioinformatics. 2007 May 9;8:151.

PMID:
17490482
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data.

Jung S, Staton M, Lee T, Blenda A, Svancara R, Abbott A, Main D.

Nucleic Acids Res. 2008 Jan;36(Database issue):D1034-40. Epub 2007 Oct 11.

PMID:
17932055
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

An overview of the BioExtract Server: a distributed, Web-based system for genomic analysis.

Lushbough CM, Brendel VP.

Adv Exp Med Biol. 2010;680:361-9. doi: 10.1007/978-1-4419-5913-3_41.

PMID:
20865520
[PubMed - indexed for MEDLINE]
19.

MIPS: analysis and annotation of genome information in 2007.

Mewes HW, Dietmann S, Frishman D, Gregory R, Mannhaupt G, Mayer KF, Münsterkötter M, Ruepp A, Spannagl M, Stümpflen V, Rattei T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D196-201. Epub 2007 Dec 23.

PMID:
18158298
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The bioinformatics resource for oral pathogens.

Chen T, Abbey K, Deng WJ, Cheng MC.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W734-40.

PMID:
15980574
[PubMed - indexed for MEDLINE]
Free PMC Article
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