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Results: 1 to 20 of 91

1.

Evaluation of enzymatic cell treatments for application of CARD-FISH to methanogens.

Kubota K, Imachi H, Kawakami S, Nakamura K, Harada H, Ohashi A.

J Microbiol Methods. 2008 Jan;72(1):54-9. Epub 2007 Oct 26.

PMID:
18022717
[PubMed - indexed for MEDLINE]
2.

Two major archaeal pseudomurein endoisopeptidases: PeiW and PeiP.

Visweswaran GR, Dijkstra BW, Kok J.

Archaea. 2010 Nov 11;2010:480492. doi: 10.1155/2010/480492. Review.

PMID:
21113291
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization.

Sekar R, Pernthaler A, Pernthaler J, Warnecke F, Posch T, Amann R.

Appl Environ Microbiol. 2003 May;69(5):2928-35.

PMID:
12732568
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Application of pseudomurein endoisopeptidase to fluorescence in situ hybridization of methanogens within the family Methanobacteriaceae.

Nakamura K, Terada T, Sekiguchi Y, Shinzato N, Meng XY, Enoki M, Kamagata Y.

Appl Environ Microbiol. 2006 Nov;72(11):6907-13. Epub 2006 Sep 1.

PMID:
16950902
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Improved quantification of Dehalococcoides species by fluorescence in situ hybridization and catalyzed reporter deposition.

Fazi S, Aulenta F, Majone M, Rossetti S.

Syst Appl Microbiol. 2008 Mar;31(1):62-7. doi: 10.1016/j.syapm.2007.11.001. Epub 2008 Jan 30.

PMID:
18249080
[PubMed - indexed for MEDLINE]
6.

Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria.

Pernthaler A, Pernthaler J, Amann R.

Appl Environ Microbiol. 2002 Jun;68(6):3094-101.

PMID:
12039771
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Use of an alternative Archaea-specific probe for methanogen detection.

Jupraputtasri W, Boonapatcharoen N, Cheevadhanarak S, Chaiprasert P, Tanticharoen M, Techkarnjanaruk S.

J Microbiol Methods. 2005 Apr;61(1):95-104.

PMID:
15676200
[PubMed - indexed for MEDLINE]
8.

Improved permeabilization protocols for fluorescence in situ hybridization (FISH) of mycolic-acid-containing bacteria found in foams.

Carr EL, Eales K, Soddell J, Seviour RJ.

J Microbiol Methods. 2005 Apr;61(1):47-54.

PMID:
15676195
[PubMed - indexed for MEDLINE]
9.

Optimization of three FISH procedures for in situ detection of anaerobic ammonium oxidizing bacteria in biological wastewater treatment.

Pavlekovic M, Schmid MC, Schmider-Poignee N, Spring S, Pilhofer M, Gaul T, Fiandaca M, Löffler FE, Jetten M, Schleifer KH, Lee NM.

J Microbiol Methods. 2009 Aug;78(2):119-26. doi: 10.1016/j.mimet.2009.04.003. Epub 2009 Apr 20.

PMID:
19389431
[PubMed - indexed for MEDLINE]
10.

An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments.

Ishii K, Mussmann M, MacGregor BJ, Amann R.

FEMS Microbiol Ecol. 2004 Nov 1;50(3):203-13. doi: 10.1016/j.femsec.2004.06.015.

PMID:
19712361
[PubMed - indexed for MEDLINE]
11.

Catalyzed reporter deposition-fluorescent in situ hybridization (CARD-FISH) detection of Dehalococcoides.

Dijk JA, Breugelmans P, Philips J, Haest PJ, Smolders E, Springael D.

J Microbiol Methods. 2008 May;73(2):142-7. doi: 10.1016/j.mimet.2008.01.012. Epub 2008 Feb 11.

PMID:
18410973
[PubMed - indexed for MEDLINE]
12.

Methanogen community in Zoige wetland of Tibetan plateau and phenotypic characterization of a dominant uncultured methanogen cluster ZC-I.

Zhang G, Tian J, Jiang N, Guo X, Wang Y, Dong X.

Environ Microbiol. 2008 Jul;10(7):1850-60. doi: 10.1111/j.1462-2920.2008.01606.x. Epub 2008 Mar 28.

PMID:
18373675
[PubMed - indexed for MEDLINE]
13.

Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH.

Hoshino T, Yilmaz LS, Noguera DR, Daims H, Wagner M.

Appl Environ Microbiol. 2008 Aug;74(16):5068-77. doi: 10.1128/AEM.00208-08. Epub 2008 Jun 13.

PMID:
18552182
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Evaluation of fluorescence in situ hybridization to detect encapsulated Bacillus pumilus SAFR-032 spores released from poly(methylmethacrylate).

Mohapatra BR, La Duc MT.

Microbiol Immunol. 2012 Jan;56(1):40-7. doi: 10.1111/j.1348-0421.2011.00404.x.

PMID:
22145981
[PubMed - indexed for MEDLINE]
15.

Enzymatic lysis of the pseudomurein-containing methanogen Methanobacterium formicicum.

Bush JW.

J Bacteriol. 1985 Jul;163(1):27-36.

PMID:
3891731
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Microbial characteristics of a methanogenic phenol-degrading sludge.

Zhang T, Ke SZ, Liu Y, Fang HP.

Water Sci Technol. 2005;52(1-2):73-8.

PMID:
16180411
[PubMed - indexed for MEDLINE]
17.

Fluorescence in situ hybridization for the identification of environmental microbes.

Pernthaler A, Pernthaler J.

Methods Mol Biol. 2007;353:153-64.

PMID:
17332640
[PubMed - indexed for MEDLINE]
18.

Catalyzed reported deposition-fluorescence in situ hybridization protocol to evaluate phagotrophy in mixotrophic protists.

Medina-Sánchez JM, Felip M, Casamayor EO.

Appl Environ Microbiol. 2005 Nov;71(11):7321-6.

PMID:
16269774
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Prokaryotic community analysis with CARD-FISH in comparison with FISH in ultra-oligotrophic ground- and drinking water.

Wilhartitz I, Mach RL, Teira E, Reinthaler T, Herndl GJ, Farnleitner AH.

J Appl Microbiol. 2007 Oct;103(4):871-81.

PMID:
17897189
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean.

Teira E, Reinthaler T, Pernthaler A, Pernthaler J, Herndl GJ.

Appl Environ Microbiol. 2004 Jul;70(7):4411-4.

PMID:
15240332
[PubMed - indexed for MEDLINE]
Free PMC Article

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