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Items: 1 to 20 of 88

1.

AAindex: amino acid index database, progress report 2008.

Kawashima S, Pokarowski P, Pokarowska M, Kolinski A, Katayama T, Kanehisa M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D202-5. Epub 2007 Nov 12.

2.

AAindex: amino acid index database.

Kawashima S, Kanehisa M.

Nucleic Acids Res. 2000 Jan 1;28(1):374.

3.

AAindex: Amino Acid Index Database.

Kawashima S, Ogata H, Kanehisa M.

Nucleic Acids Res. 1999 Jan 1;27(1):368-9.

4.

LIGAND: database of chemical compounds and reactions in biological pathways.

Goto S, Okuno Y, Hattori M, Nishioka T, Kanehisa M.

Nucleic Acids Res. 2002 Jan 1;30(1):402-4.

5.

LIGAND: chemical database for enzyme reactions.

Goto S, Nishioka T, Kanehisa M.

Bioinformatics. 1998;14(7):591-9.

6.

LIGAND database for enzymes, compounds and reactions.

Goto S, Nishioka T, Kanehisa M.

Nucleic Acids Res. 1999 Jan 1;27(1):377-9.

7.

LIGAND: chemical database of enzyme reactions.

Goto S, Nishioka T, Kanehisa M.

Nucleic Acids Res. 2000 Jan 1;28(1):380-2.

8.

DBGET/LinkDB: an integrated database retrieval system.

Fujibuchi W, Goto S, Migimatsu H, Uchiyama I, Ogiwara A, Akiyama Y, Kanehisa M.

Pac Symp Biocomput. 1998:683-94.

10.

iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions.

Finn RD, Marshall M, Bateman A.

Bioinformatics. 2005 Feb 1;21(3):410-2. Epub 2004 Sep 7.

11.

Fuzzy clustering of physicochemical and biochemical properties of amino acids.

Saha I, Maulik U, Bandyopadhyay S, Plewczynski D.

Amino Acids. 2012 Aug;43(2):583-94. doi: 10.1007/s00726-011-1106-9. Epub 2011 Oct 13.

12.

STING Report: convenient web-based application for graphic and tabular presentations of protein sequence, structure and function descriptors from the STING database.

Neshich G, Mancini AL, Yamagishi ME, Kuser PR, Fileto R, Pinto IP, Palandrani JF, Krauchenco JN, Baudet C, Montagner AJ, Higa RH.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D269-74.

13.

The Protein Data Bank: unifying the archive.

Westbrook J, Feng Z, Jain S, Bhat TN, Thanki N, Ravichandran V, Gilliland GL, Bluhm W, Weissig H, Greer DS, Bourne PE, Berman HM.

Nucleic Acids Res. 2002 Jan 1;30(1):245-8.

14.

CKAAPs DB: a Conserved Key Amino Acid Positions DataBase.

Li WW, Reddy BV, Tate JG, Shindyalov IN, Bourne PE.

Nucleic Acids Res. 2002 Jan 1;30(1):409-11.

15.

The Universal Protein Resource (UniProt).

Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D154-9.

16.

PPD v1.0--an integrated, web-accessible database of experimentally determined protein pKa values.

Toseland CP, McSparron H, Davies MN, Flower DR.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D199-203.

17.

The binding interface database (BID): a compilation of amino acid hot spots in protein interfaces.

Fischer TB, Arunachalam KV, Bailey D, Mangual V, Bakhru S, Russo R, Huang D, Paczkowski M, Lalchandani V, Ramachandra C, Ellison B, Galer S, Shapley J, Fuentes E, Tsai J.

Bioinformatics. 2003 Jul 22;19(11):1453-4.

18.

New developments in the InterPro database.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Gough J, Haft D, Hulo N, Hunter S, Kahn D, Kanapin A, Kejariwal A, Labarga A, Langendijk-Genevaux PS, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Nikolskaya AN, Orchard S, Orengo C, Petryszak R, Selengut JD, Sigrist CJ, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C.

Nucleic Acids Res. 2007 Jan;35(Database issue):D224-8.

19.

UniProt: the Universal Protein knowledgebase.

Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D115-9.

20.

The Universal Protein Resource (UniProt): an expanding universe of protein information.

Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Mazumder R, O'Donovan C, Redaschi N, Suzek B.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D187-91.

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