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Results: 1 to 20 of 72

1.

Absent sequences: nullomers and primes.

Hampikian G, Andersen T.

Pac Symp Biocomput. 2007:355-66.

PMID:
17990505
[PubMed - indexed for MEDLINE]
Free Article
2.

SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences.

Liuni S, Prunella N, Pesole G, D'Orazio T, Stella E, Distante A.

Comput Appl Biosci. 1993 Dec;9(6):701-7.

PMID:
8143157
[PubMed - indexed for MEDLINE]
3.

Frequency-domain analysis of biomolecular sequences.

Anastassiou D.

Bioinformatics. 2000 Dec;16(12):1073-81.

PMID:
11159326
[PubMed - indexed for MEDLINE]
Free Article
4.

Nullomers: really a matter of natural selection?

Acquisti C, Poste G, Curtiss D, Kumar S.

PLoS One. 2007 Oct 10;2(10):e1022.

PMID:
17925870
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

CSA: an efficient algorithm to improve circular DNA multiple alignment.

Fernandes F, Pereira L, Freitas AT.

BMC Bioinformatics. 2009 Jul 23;10:230. doi: 10.1186/1471-2105-10-230.

PMID:
19627599
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison.

Brown CT, Xie Y, Davidson EH, Cameron RA.

BMC Bioinformatics. 2005 Mar 24;6:70.

PMID:
15790396
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Continued colonization of the human genome by mitochondrial DNA.

Ricchetti M, Tekaia F, Dujon B.

PLoS Biol. 2004 Sep;2(9):E273. Epub 2004 Sep 7.

PMID:
15361937
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

GCG: assembly of sequences into new sequence constructs.

Dölz R.

Methods Mol Biol. 1994;24:57-63. No abstract available.

PMID:
8205208
[PubMed - indexed for MEDLINE]
9.

New method for yeast identification using Burrows-Wheeler transform.

Pokrzywa R.

J Bioinform Comput Biol. 2008 Apr;6(2):403-13.

PMID:
18464330
[PubMed - indexed for MEDLINE]
10.

Genome comparison without alignment using shortest unique substrings.

Haubold B, Pierstorff N, Möller F, Wiehe T.

BMC Bioinformatics. 2005 May 23;6:123.

PMID:
15910684
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm.

Wolfertstetter F, Frech K, Herrmann G, Werner T.

Comput Appl Biosci. 1996 Feb;12(1):71-80.

PMID:
8670622
[PubMed - indexed for MEDLINE]
12.

Design and assessment of a fast algorithm for identifying specific probes for human and mouse genes.

Chang PC, Peck K.

Bioinformatics. 2003 Jul 22;19(11):1311-7.

PMID:
12874041
[PubMed - indexed for MEDLINE]
Free Article
13.

A two-stage evolutionary approach for effective classification of hypersensitive DNA sequences.

Kamath U, Shehu A, De Jong KA.

J Bioinform Comput Biol. 2011 Jun;9(3):399-413.

PMID:
21714132
[PubMed - indexed for MEDLINE]
14.

Efficient identification of DNA hybridization partners in a sequence database.

Mann TP, Noble WS.

Bioinformatics. 2006 Jul 15;22(14):e350-8.

PMID:
16873493
[PubMed - indexed for MEDLINE]
Free Article
15.

GenBank.

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.

Nucleic Acids Res. 2010 Jan;38(Database issue):D46-51. doi: 10.1093/nar/gkp1024. Epub 2009 Nov 12.

PMID:
19910366
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An algorithm for finding signals of unknown length in DNA sequences.

Pavesi G, Mauri G, Pesole G.

Bioinformatics. 2001;17 Suppl 1:S207-14.

PMID:
11473011
[PubMed - indexed for MEDLINE]
Free Article
17.

Optimal word sizes for dissimilarity measures and estimation of the degree of dissimilarity between DNA sequences.

Wu TJ, Huang YH, Li LA.

Bioinformatics. 2005 Nov 15;21(22):4125-32. Epub 2005 Sep 6.

PMID:
16144805
[PubMed - indexed for MEDLINE]
Free Article
18.

A high-resolution radiation hybrid map of the human genome draft sequence.

Olivier M, Aggarwal A, Allen J, Almendras AA, Bajorek ES, Beasley EM, Brady SD, Bushard JM, Bustos VI, Chu A, Chung TR, De Witte A, Denys ME, Dominguez R, Fang NY, Foster BD, Freudenberg RW, Hadley D, Hamilton LR, Jeffrey TJ, Kelly L, Lazzeroni L, Levy MR, Lewis SC, Liu X, Lopez FJ, Louie B, Marquis JP, Martinez RA, Matsuura MK, Misherghi NS, Norton JA, Olshen A, Perkins SM, Perou AJ, Piercy C, Piercy M, Qin F, Reif T, Sheppard K, Shokoohi V, Smick GA, Sun WL, Stewart EA, Fernando J, Tejeda, Tran NM, Trejo T, Vo NT, Yan SC, Zierten DL, Zhao S, Sachidanandam R, Trask BJ, Myers RM, Cox DR.

Science. 2001 Feb 16;291(5507):1298-302.

PMID:
11181994
[PubMed - indexed for MEDLINE]
Free Article
19.

Specialized microbial databases for inductive exploration of microbial genome sequences.

Fang G, Ho C, Qiu Y, Cubas V, Yu Z, Cabau C, Cheung F, Moszer I, Danchin A.

BMC Genomics. 2005 Feb 7;6:14.

PMID:
15698474
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Prediction of probable genes by Fourier analysis of genomic sequences.

Tiwari S, Ramachandran S, Bhattacharya A, Bhattacharya S, Ramaswamy R.

Comput Appl Biosci. 1997 Jun;13(3):263-70.

PMID:
9183531
[PubMed - indexed for MEDLINE]

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