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Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

Engström PG, Ho Sui SJ, Drivenes O, Becker TS, Lenhard B.

Genome Res. 2007 Dec;17(12):1898-908. Epub 2007 Nov 7.


Motor neuron-expressed microRNAs 218 and their enhancers are nested within introns of Slit2/3 genes.

Punnamoottil B, Rinkwitz S, Giacomotto J, Svahn AJ, Becker TS.

Genesis. 2015 May;53(5):321-8. doi: 10.1002/dvg.22852. Epub 2015 Apr 28.


Evolution of an epigenetic gene ensemble within the genus Anopheles.

Jenkins AM, Muskavitch MA.

Genome Biol Evol. 2015 Feb 26;7(3):901-15. doi: 10.1093/gbe/evv041.


Bidirectional promoters of insects: genome-wide comparison, evolutionary implication and influence on gene expression.

Behura SK, Severson DW.

J Mol Biol. 2015 Jan 30;427(2):521-36. doi: 10.1016/j.jmb.2014.11.008. Epub 2014 Nov 15.


Dynamic epigenetic control of highly conserved noncoding elements.

Seridi L, Ryu T, Ravasi T.

PLoS One. 2014 Oct 7;9(10):e109326. doi: 10.1371/journal.pone.0109326. eCollection 2014.


Disputed islands.

Pennisi E.

Science. 2014 Aug 8;345(6197):611-3. doi: 10.1126/science.345.6197.611. No abstract available.


Underreplicated regions in Drosophila melanogaster are enriched with fast-evolving genes and highly conserved noncoding sequences.

Makunin IV, Kolesnikova TD, Andreyenkova NG.

Genome Biol Evol. 2014 Jul 24;6(8):2050-60. doi: 10.1093/gbe/evu156.


Genomic composition and evolution of Aedes aegypti chromosomes revealed by the analysis of physically mapped supercontigs.

Timoshevskiy VA, Kinney NA, deBruyn BS, Mao C, Tu Z, Severson DW, Sharakhov IV, Sharakhova MV.

BMC Biol. 2014 Apr 14;12:27. doi: 10.1186/1741-7007-12-27.


Late replication domains are evolutionary conserved in the Drosophila genome.

Andreyenkova NG, Kolesnikova TD, Makunin IV, Pokholkova GV, Boldyreva LV, Zykova TY, Zhimulev IF, Belyaeva ES.

PLoS One. 2013 Dec 31;8(12):e83319. doi: 10.1371/journal.pone.0083319. eCollection 2013.


Expression-based segmentation of the Drosophila genome.

Rubin AF, Green P.

BMC Genomics. 2013 Nov 20;14:812. doi: 10.1186/1471-2164-14-812.


Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality.

Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, Wen J, Parker BJ, Cash E, Privman E, Childers CP, Muñoz-Torres MC, Boomsma JJ, Bornberg-Bauer E, Currie CR, Elsik CG, Suen G, Goodisman MA, Keller L, Liebig J, Rawls A, Reinberg D, Smith CD, Smith CR, Tsutsui N, Wurm Y, Zdobnov EM, Berger SL, Gadau J.

Genome Res. 2013 Aug;23(8):1235-47. doi: 10.1101/gr.155408.113. Epub 2013 May 1.


Cis-regulatory complexity within a large non-coding region in the Drosophila genome.

Kundu M, Kuzin A, Lin TY, Lee CH, Brody T, Odenwald WF.

PLoS One. 2013 Apr 22;8(4):e60137. doi: 10.1371/journal.pone.0060137. Print 2013.


Vertebrate paralogous conserved noncoding sequences may be related to gene expressions in brain.

Matsunami M, Saitou N.

Genome Biol Evol. 2013;5(1):140-50. doi: 10.1093/gbe/evs128.


Conserved boundary elements from the Hox complex of mosquito, Anopheles gambiae.

Ahanger SH, Srinivasan A, Vasanthi D, Shouche YS, Mishra RK.

Nucleic Acids Res. 2013 Jan;41(2):804-16. doi: 10.1093/nar/gks1178. Epub 2012 Dec 4.


UCNEbase--a database of ultraconserved non-coding elements and genomic regulatory blocks.

Dimitrieva S, Bucher P.

Nucleic Acids Res. 2013 Jan;41(Database issue):D101-9. doi: 10.1093/nar/gks1092. Epub 2012 Nov 27.


Characterization of genomic regulatory domains conserved across the genus Drosophila.

Sahagun V, Ranz JM.

Genome Biol Evol. 2012;4(10):1054-60. doi: 10.1093/gbe/evs089.


Recent progress on the identity and characterization of factors that shape gene organization during eukaryotic evolution.

Díaz-Castillo C, Ranz JM.

Fly (Austin). 2012 Jul-Sep;6(3):158-61. doi: 10.4161/fly.20861. Epub 2012 Jun 22.


Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints.

Irimia M, Tena JJ, Alexis MS, Fernandez-Miñan A, Maeso I, Bogdanovic O, de la Calle-Mustienes E, Roy SW, Gómez-Skarmeta JL, Fraser HB.

Genome Res. 2012 Dec;22(12):2356-67. doi: 10.1101/gr.139725.112. Epub 2012 Jun 21.


Where's the money? Inversions, genes, and the hunt for genomic targets of selection.

Kirkpatrick M, Kern A.

Genetics. 2012 Apr;190(4):1153-5. doi: 10.1534/genetics.112.139899. No abstract available.

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