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Results: 1 to 20 of 212

1.

Hierarchical tree snipping: clustering guided by prior knowledge.

Dotan-Cohen D, Melkman AA, Kasif S.

Bioinformatics. 2007 Dec 15;23(24):3335-42. Epub 2007 Nov 7.

PMID:
17989094
[PubMed - indexed for MEDLINE]
Free Article
2.

Divisive Correlation Clustering Algorithm (DCCA) for grouping of genes: detecting varying patterns in expression profiles.

Bhattacharya A, De RK.

Bioinformatics. 2008 Jun 1;24(11):1359-66. doi: 10.1093/bioinformatics/btn133. Epub 2008 Apr 10.

PMID:
18407922
[PubMed - indexed for MEDLINE]
Free Article
3.

A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings.

Torrente A, Kapushesky M, Brazma A.

Bioinformatics. 2005 Nov 1;21(21):3993-9. Epub 2005 Sep 1.

PMID:
16141251
[PubMed - indexed for MEDLINE]
Free Article
4.

Graph-based consensus clustering for class discovery from gene expression data.

Yu Z, Wong HS, Wang H.

Bioinformatics. 2007 Nov 1;23(21):2888-96. Epub 2007 Sep 14.

PMID:
17872912
[PubMed - indexed for MEDLINE]
Free Article
5.

Clustering of change patterns using Fourier coefficients.

Kim J, Kim H.

Bioinformatics. 2008 Jan 15;24(2):184-91. Epub 2007 Nov 19.

PMID:
18025003
[PubMed - indexed for MEDLINE]
Free Article
6.

Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset.

Liu X, Sivaganesan S, Yeung KY, Guo J, Bumgarner RE, Medvedovic M.

Bioinformatics. 2006 Jul 15;22(14):1737-44. Epub 2006 May 18.

PMID:
16709591
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach.

Pihur V, Datta S, Datta S.

Bioinformatics. 2007 Jul 1;23(13):1607-15. Epub 2007 May 5.

PMID:
17483500
[PubMed - indexed for MEDLINE]
Free Article
8.

Attribute clustering for grouping, selection, and classification of gene expression data.

Au WH, Chan KC, Wong AK, Wang Y.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Apr-Jun;2(2):83-101. Erratum in: IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):157.

PMID:
17044174
[PubMed - indexed for MEDLINE]
9.

A dynamically growing self-organizing tree (DGSOT) for hierarchical clustering gene expression profiles.

Luo F, Khan L, Bastani F, Yen IL, Zhou J.

Bioinformatics. 2004 Nov 1;20(16):2605-17. Epub 2004 May 6.

PMID:
15130935
[PubMed - indexed for MEDLINE]
Free Article
10.

Clustering and re-clustering for pattern discovery in gene expression data.

Ma PC, Chan KC, Chiu DK.

J Bioinform Comput Biol. 2005 Apr;3(2):281-301.

PMID:
15852506
[PubMed - indexed for MEDLINE]
11.

An unsupervised hierarchical dynamic self-organizing approach to cancer class discovery and marker gene identification in microarray data.

Hsu AL, Tang SL, Halgamuge SK.

Bioinformatics. 2003 Nov 1;19(16):2131-40.

PMID:
14594719
[PubMed - indexed for MEDLINE]
Free Article
12.

Detecting clusters of different geometrical shapes in microarray gene expression data.

Kim DW, Lee KH, Lee D.

Bioinformatics. 2005 May 1;21(9):1927-34. Epub 2005 Jan 12.

PMID:
15647300
[PubMed - indexed for MEDLINE]
Free Article
13.

Dynamic range-based distance measure for microarray expressions and a fast gene-ordering algorithm.

Ray SS, Bandyopadhyay S, Pal SK.

IEEE Trans Syst Man Cybern B Cybern. 2007 Jun;37(3):742-9.

PMID:
17550128
[PubMed - indexed for MEDLINE]
14.

Mining gene expression data based on template theory.

Yang ZR.

Bioinformatics. 2004 Nov 1;20(16):2759-66. Epub 2004 May 27.

PMID:
15166017
[PubMed - indexed for MEDLINE]
Free Article
15.

A mixture model with random-effects components for clustering correlated gene-expression profiles.

Ng SK, McLachlan GJ, Wang K, Ben-Tovim Jones L, Ng SW.

Bioinformatics. 2006 Jul 15;22(14):1745-52. Epub 2006 May 3.

PMID:
16675467
[PubMed - indexed for MEDLINE]
Free Article
16.

A fully Bayesian model to cluster gene-expression profiles.

Vogl C, Sanchez-Cabo F, Stocker G, Hubbard S, Wolkenhauer O, Trajanoski Z.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii130-6.

PMID:
16204092
[PubMed - indexed for MEDLINE]
Free Article
17.

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.

Datta S, Datta S.

BMC Bioinformatics. 2006 Aug 31;7:397.

PMID:
16945146
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Noise-robust soft clustering of gene expression time-course data.

Futschik ME, Carlisle B.

J Bioinform Comput Biol. 2005 Aug;3(4):965-88.

PMID:
16078370
[PubMed - indexed for MEDLINE]
19.

Subdimension-based similarity measure for DNA microarray data clustering.

Lam BS, Yan H.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Oct;74(4 Pt 1):041906. Epub 2006 Oct 9.

PMID:
17155095
[PubMed - indexed for MEDLINE]
20.

A practical comparison of two K-Means clustering algorithms.

Wilkin GA, Huang X.

BMC Bioinformatics. 2008 May 28;9 Suppl 6:S19. doi: 10.1186/1471-2105-9-S6-S19.

PMID:
18541054
[PubMed - indexed for MEDLINE]
Free PMC Article

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