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Results: 1 to 20 of 1805

1.

Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.

Chou JW, Zhou T, Kaufmann WK, Paules RS, Bushel PR.

BMC Bioinformatics. 2007 Nov 2;8:427.

PMID:
17980031
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Clustering and re-clustering for pattern discovery in gene expression data.

Ma PC, Chan KC, Chiu DK.

J Bioinform Comput Biol. 2005 Apr;3(2):281-301.

PMID:
15852506
[PubMed - indexed for MEDLINE]
3.

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416. doi: 10.1186/1471-2105-9-416.

PMID:
18837990
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Identifying projected clusters from gene expression profiles.

Yip KY, Cheung DW, Ng MK, Cheung KH.

J Biomed Inform. 2004 Oct;37(5):345-57.

PMID:
15488748
[PubMed - indexed for MEDLINE]
5.

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory.

Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J.

BMC Bioinformatics. 2007 Aug 14;8:299.

PMID:
17697349
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Clustering of change patterns using Fourier coefficients.

Kim J, Kim H.

Bioinformatics. 2008 Jan 15;24(2):184-91. Epub 2007 Nov 19.

PMID:
18025003
[PubMed - indexed for MEDLINE]
Free Article
7.

Clustering biological annotations and gene expression data to identify putatively co-regulated biological processes.

Henegar C, Cancello R, Rome S, Vidal H, Clément K, Zucker JD.

J Bioinform Comput Biol. 2006 Aug;4(4):833-52.

PMID:
17007070
[PubMed - indexed for MEDLINE]
8.

Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization.

Cheng KO, Law NF, Siu WC, Liew AW.

BMC Bioinformatics. 2008 Apr 23;9:210. doi: 10.1186/1471-2105-9-210.

PMID:
18433478
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Identification of gene expression patterns using planned linear contrasts.

Li H, Wood CL, Liu Y, Getchell TV, Getchell ML, Stromberg AJ.

BMC Bioinformatics. 2006 May 5;7:245.

PMID:
16677382
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.

Datta S, Datta S.

BMC Bioinformatics. 2006 Aug 31;7:397.

PMID:
16945146
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Identification of temporal association rules from time-series microarray data sets.

Nam H, Lee K, Lee D.

BMC Bioinformatics. 2009 Mar 19;10 Suppl 3:S6. doi: 10.1186/1471-2105-10-S3-S6.

PMID:
19344482
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

CLICK and EXPANDER: a system for clustering and visualizing gene expression data.

Sharan R, Maron-Katz A, Shamir R.

Bioinformatics. 2003 Sep 22;19(14):1787-99.

PMID:
14512350
[PubMed - indexed for MEDLINE]
Free Article
13.

A meta-data based method for DNA microarray imputation.

Jörnsten R, Ouyang M, Wang HY.

BMC Bioinformatics. 2007 Mar 29;8:109.

PMID:
17394658
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Attribute clustering for grouping, selection, and classification of gene expression data.

Au WH, Chan KC, Wong AK, Wang Y.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Apr-Jun;2(2):83-101. Erratum in: IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):157.

PMID:
17044174
[PubMed - indexed for MEDLINE]
15.

Knowledge guided analysis of microarray data.

Fang Z, Yang J, Li Y, Luo Q, Liu L.

J Biomed Inform. 2006 Aug;39(4):401-11. Epub 2005 Sep 15.

PMID:
16214421
[PubMed - indexed for MEDLINE]
Free Article
16.

Extracting active pathways from gene expression data.

Vert JP, Kanehisa M.

Bioinformatics. 2003 Oct;19 Suppl 2:ii238-44.

PMID:
14534196
[PubMed - indexed for MEDLINE]
Free Article
17.

Symmetric and asymmetric multi-modality biclustering analysis for microarray data matrix.

Kung SY, Mak MW, Tagkopoulos I.

J Bioinform Comput Biol. 2006 Apr;4(2):275-98.

PMID:
16819784
[PubMed - indexed for MEDLINE]
18.

Noise-robust soft clustering of gene expression time-course data.

Futschik ME, Carlisle B.

J Bioinform Comput Biol. 2005 Aug;3(4):965-88.

PMID:
16078370
[PubMed - indexed for MEDLINE]
19.

Identifying periodically expressed transcripts in microarray time series data.

Wichert S, Fokianos K, Strimmer K.

Bioinformatics. 2004 Jan 1;20(1):5-20.

PMID:
14693803
[PubMed - indexed for MEDLINE]
Free Article
20.

Detecting biological associations between genes based on the theory of phase synchronization.

Kim CS, Riikonen P, Salakoski T.

Biosystems. 2008 May;92(2):99-113. doi: 10.1016/j.biosystems.2007.12.006. Epub 2008 Jan 11.

PMID:
18289772
[PubMed - indexed for MEDLINE]
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