Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 1 to 20 of 193


The extent of linkage disequilibrium in rice (Oryza sativa L.).

Mather KA, Caicedo AL, Polato NR, Olsen KM, McCouch S, Purugganan MD.

Genetics. 2007 Dec;177(4):2223-32. Epub 2007 Oct 18.


Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice.

Zhu Q, Zheng X, Luo J, Gaut BS, Ge S.

Mol Biol Evol. 2007 Mar;24(3):875-88. Epub 2007 Jan 11.


Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa.

Londo JP, Chiang YC, Hung KH, Chiang TY, Schaal BA.

Proc Natl Acad Sci U S A. 2006 Jun 20;103(25):9578-83. Epub 2006 Jun 9.


Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice.

Rakshit S, Rakshit A, Matsumura H, Takahashi Y, Hasegawa Y, Ito A, Ishii T, Miyashita NT, Terauchi R.

Theor Appl Genet. 2007 Feb;114(4):731-43. Epub 2007 Jan 12.


Levels and patterns of nucleotide variation in domestication QTL regions on rice chromosome 3 suggest lineage-specific selection.

Xie X, Molina J, Hernandez R, Reynolds A, Boyko AR, Bustamante CD, Purugganan MD.

PLoS One. 2011;6(6):e20670. doi: 10.1371/journal.pone.0020670. Epub 2011 Jun 6.


Chloroplast DNA polymorphism and evolutional relationships between Asian cultivated rice (Oryza sativa) and its wild relatives (O. rufipogon).

Li WJ, Zhang B, Huang GW, Kang GP, Liang MZ, Chen LB.

Genet Mol Res. 2012 Dec 17;11(4):4418-31. doi: 10.4238/2012.October.9.8.


Molecular evolution of the endosperm starch synthesis pathway genes in rice (Oryza sativa L.) and its wild ancestor, O. rufipogon L.

Yu G, Olsen KM, Schaal BA.

Mol Biol Evol. 2011 Jan;28(1):659-71. doi: 10.1093/molbev/msq243. Epub 2010 Sep 9.


Diversity and selective sweep in the OsAMT1;1 genomic region of rice.

Ding Z, Wang C, Chen S, Yu S.

BMC Evol Biol. 2011 Mar 8;11:61. doi: 10.1186/1471-2148-11-61.


Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus.

Petit J, Bourgeois E, Stenger W, Bès M, Droc G, Meynard D, Courtois B, Ghesquière A, Sabot F, Panaud O, Guiderdoni E.

Mol Genet Genomics. 2009 Dec;282(6):633-52. doi: 10.1007/s00438-009-0493-z. Epub 2009 Oct 25.


Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome.

Zhao K, Wright M, Kimball J, Eizenga G, McClung A, Kovach M, Tyagi W, Ali ML, Tung CW, Reynolds A, Bustamante CD, McCouch SR.

PLoS One. 2010 May 24;5(5):e10780. doi: 10.1371/journal.pone.0010780.


A map of rice genome variation reveals the origin of cultivated rice.

Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.

Nature. 2012 Oct 25;490(7421):497-501. doi: 10.1038/nature11532. Epub 2012 Oct 3.


Genome-wide patterns of nucleotide polymorphism in domesticated rice.

Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, Polato NR, Olsen KM, Nielsen R, McCouch SR, Bustamante CD, Purugganan MD.

PLoS Genet. 2007 Sep;3(9):1745-56. Epub 2007 Aug 6.


Population structure and genetic diversity in a rice core collection (Oryza sativa L.) investigated with SSR markers.

Zhang P, Li J, Li X, Liu X, Zhao X, Lu Y.

PLoS One. 2011;6(12):e27565. doi: 10.1371/journal.pone.0027565. Epub 2011 Dec 2.


Footprints of natural and artificial selection for photoperiod pathway genes in Oryza.

Huang CL, Hung CY, Chiang YC, Hwang CC, Hsu TW, Huang CC, Hung KH, Tsai KC, Wang KH, Osada N, Schaal BA, Chiang TY.

Plant J. 2012 Jun;70(5):769-82. doi: 10.1111/j.1365-313X.2012.04915.x. Epub 2012 Mar 8.


Phylogeography of Asian wild rice, Oryza rufipogon: a genome-wide view.

Huang P, Molina J, Flowers JM, Rubinstein S, Jackson SA, Purugganan MD, Schaal BA.

Mol Ecol. 2012 Sep;21(18):4593-604. doi: 10.1111/j.1365-294X.2012.05625.x. Epub 2012 May 30.


Natural selection in gene-dense regions shapes the genomic pattern of polymorphism in wild and domesticated rice.

Flowers JM, Molina J, Rubinstein S, Huang P, Schaal BA, Purugganan MD.

Mol Biol Evol. 2012 Feb;29(2):675-87. doi: 10.1093/molbev/msr225. Epub 2011 Sep 13.


Polyphyletic origin of cultivated rice: based on the interspersion pattern of SINEs.

Cheng C, Motohashi R, Tsuchimoto S, Fukuta Y, Ohtsubo H, Ohtsubo E.

Mol Biol Evol. 2003 Jan;20(1):67-75.


Domestication and geographic origin of Oryza sativa in China: insights from multilocus analysis of nucleotide variation of O. sativa and O. rufipogon.

Wei X, Qiao WH, Chen YT, Wang RS, Cao LR, Zhang WX, Yuan NN, Li ZC, Zeng HL, Yang QW.

Mol Ecol. 2012 Oct;21(20):5073-87. doi: 10.1111/j.1365-294X.2012.05748.x. Epub 2012 Sep 18.

Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk