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Results: 1 to 20 of 83

1.

Identification of DNA motifs implicated in maintenance of bacterial core genomes by predictive modeling.

Halpern D, Chiapello H, Schbath S, Robin S, Hennequet-Antier C, Gruss A, El Karoui M.

PLoS Genet. 2007 Sep;3(9):1614-21.

PMID:
17941709
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Characteristics of Chi distribution on different bacterial genomes.

El Karoui M, Biaudet V, Schbath S, Gruss A.

Res Microbiol. 1999 Nov-Dec;150(9-10):579-87.

PMID:
10672998
[PubMed - indexed for MEDLINE]
3.

The impact of the neisserial DNA uptake sequences on genome evolution and stability.

Treangen TJ, Ambur OH, Tonjum T, Rocha EP.

Genome Biol. 2008;9(3):R60. doi: 10.1186/gb-2008-9-3-r60. Epub 2008 Mar 26.

PMID:
18366792
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Crossover hot-spot instigator (Chi) sequences in Escherichia coli occupy distinct recombination/transcription islands.

Lao PJ, Forsdyke DR.

Gene. 2000 Feb 8;243(1-2):47-57.

PMID:
10675612
[PubMed - indexed for MEDLINE]
5.

Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes.

Studier FW, Daegelen P, Lenski RE, Maslov S, Kim JF.

J Mol Biol. 2009 Dec 11;394(4):653-80. doi: 10.1016/j.jmb.2009.09.021. Epub 2009 Sep 15.

PMID:
19765592
[PubMed - indexed for MEDLINE]
6.

Associations between inverted repeats and the structural evolution of bacterial genomes.

Achaz G, Coissac E, Netter P, Rocha EP.

Genetics. 2003 Aug;164(4):1279-89.

PMID:
12930739
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability.

Rangannan V, Bansal M.

J Biosci. 2007 Aug;32(5):851-62.

PMID:
17914227
[PubMed - indexed for MEDLINE]
Free Article
8.

DNA repair in reduced genome: the Mycoplasma model.

Carvalho FM, Fonseca MM, Batistuzzo De Medeiros S, Scortecci KC, Blaha CA, Agnez-Lima LF.

Gene. 2005 Nov 7;360(2):111-9. Epub 2005 Sep 8.

PMID:
16153783
[PubMed - indexed for MEDLINE]
9.

Mechanisms in microbial evolution.

Arber W.

J Struct Biol. 1990 Jul-Sep;104(1-3):107-11. Review.

PMID:
2088440
[PubMed - indexed for MEDLINE]
10.

Association of virulence plasmid and antibiotic resistance determinants with chromosomal multilocus genotypes in Mexican Salmonella enterica serovar Typhimurium strains.

Wiesner M, Zaidi MB, Calva E, Fernández-Mora M, Calva JJ, Silva C.

BMC Microbiol. 2009 Jul 3;9:131. doi: 10.1186/1471-2180-9-131.

PMID:
19573249
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Statistical scales of order in DNA.

Poland D.

Biophys Chem. 2009 May;141(2-3):203-13. doi: 10.1016/j.bpc.2009.02.003. Epub 2009 Feb 20.

PMID:
19254822
[PubMed - indexed for MEDLINE]
12.

Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni.

Taboada EN, Mackinnon JM, Luebbert CC, Gannon VP, Nash JH, Rahn K.

BMC Evol Biol. 2008 Aug 8;8:229. doi: 10.1186/1471-2148-8-229.

PMID:
18691421
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Systematic identification of stem-loop containing sequence families in bacterial genomes.

Cozzuto L, Petrillo M, Silvestro G, Di Nocera PP, Paolella G.

BMC Genomics. 2008 Jan 17;9:20. doi: 10.1186/1471-2164-9-20.

PMID:
18201379
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Analysis of bacterial RM-systems through genome-scale analysis and related taxonomy issues.

Vandenbogaert M, Makeev V.

In Silico Biol. 2003;3(1-2):127-43. Epub 2003 Mar 16.

PMID:
12762852
[PubMed - indexed for MEDLINE]
15.

Multiple genome comparison within a bacterial species reveals a unit of evolution spanning two adjacent genes in a tandem paralog cluster.

Tsuru T, Kobayashi I.

Mol Biol Evol. 2008 Nov;25(11):2457-73. doi: 10.1093/molbev/msn192. Epub 2008 Sep 2.

PMID:
18765438
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Transformation and DNA repair: linkage by DNA recombination.

Tønjum T, Håvarstein LS, Koomey M, Seeberg E.

Trends Microbiol. 2004 Jan;12(1):1-4. Review.

PMID:
14700543
[PubMed - indexed for MEDLINE]
17.

A common sequence motif associated with recombination hot spots and genome instability in humans.

Myers S, Freeman C, Auton A, Donnelly P, McVean G.

Nat Genet. 2008 Sep;40(9):1124-9. doi: 10.1038/ng.213.

PMID:
19165926
[PubMed - indexed for MEDLINE]
18.

Conservation in the face of diversity: multistrain analysis of an intracellular bacterium.

Dark MJ, Herndon DR, Kappmeyer LS, Gonzales MP, Nordeen E, Palmer GH, Knowles DP Jr, Brayton KA.

BMC Genomics. 2009 Jan 11;10:16. doi: 10.1186/1471-2164-10-16.

PMID:
19134224
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.

Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF.

Nature. 2007 Mar 29;446(7135):537-41. Epub 2007 Mar 7.

PMID:
17344860
[PubMed - indexed for MEDLINE]
20.

Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).

Jeong H, Barbe V, Lee CH, Vallenet D, Yu DS, Choi SH, Couloux A, Lee SW, Yoon SH, Cattolico L, Hur CG, Park HS, Ségurens B, Kim SC, Oh TK, Lenski RE, Studier FW, Daegelen P, Kim JF.

J Mol Biol. 2009 Dec 11;394(4):644-52. doi: 10.1016/j.jmb.2009.09.052. Epub 2009 Sep 26.

PMID:
19786035
[PubMed - indexed for MEDLINE]

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