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Results: 1 to 20 of 98

1.

Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection.

Graham NS, Broadley MR, Hammond JP, White PJ, May ST.

BMC Genomics. 2007 Oct 1;8:344.

PMID:
17908303
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Using genomic DNA-based probe-selection to improve the sensitivity of high-density oligonucleotide arrays when applied to heterologous species.

Hammond JP, Broadley MR, Craigon DJ, Higgins J, Emmerson ZF, Townsend HJ, White PJ, May ST.

Plant Methods. 2005 Nov 9;1(1):10.

PMID:
16280083
[PubMed]
Free PMC Article
3.

Heterologous oligonucleotide microarrays for transcriptomics in a non-model species; a proof-of-concept study of drought stress in Musa.

Davey MW, Graham NS, Vanholme B, Swennen R, May ST, Keulemans J.

BMC Genomics. 2009 Sep 16;10:436. doi: 10.1186/1471-2164-10-436.

PMID:
19758430
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Equine transcriptome quantification using human GeneChip arrays can be improved using genomic DNA hybridisation and probe selection.

Graham NS, Clutterbuck AL, James N, Lea RG, Mobasheri A, Broadley MR, May ST.

Vet J. 2010 Dec;186(3):323-7. doi: 10.1016/j.tvjl.2009.08.030. Epub 2009 Sep 27.

PMID:
19786357
[PubMed - indexed for MEDLINE]
5.

A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.

Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.

Theor Biol Med Model. 2006 Apr 7;3:19.

PMID:
16603076
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays.

Horiuchi Y, Harushima Y, Fujisawa H, Mochizuki T, Kawakita M, Sakaguchi T, Kurata N.

BMC Genomics. 2010 May 20;11:315. doi: 10.1186/1471-2164-11-315.

PMID:
20482895
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip technology.

Grigoryev DN, Ma SF, Simon BA, Irizarry RA, Ye SQ, Garcia JG.

BMC Genomics. 2005 May 4;6:62.

PMID:
15871745
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.

BMC Bioinformatics. 2007 Apr 20;8:132.

PMID:
17448222
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A comparison of the Thlaspi caerulescens and Thlaspi arvense shoot transcriptomes.

Hammond JP, Bowen HC, White PJ, Mills V, Pyke KA, Baker AJ, Whiting SN, May ST, Broadley MR.

New Phytol. 2006;170(2):239-60.

PMID:
16608451
[PubMed - indexed for MEDLINE]
10.

Development and evaluation of an Arabidopsis whole genome Affymetrix probe array.

Redman JC, Haas BJ, Tanimoto G, Town CD.

Plant J. 2004 May;38(3):545-61.

PMID:
15086809
[PubMed - indexed for MEDLINE]
11.

Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array.

Coram TE, Settles ML, Chen X.

BMC Genomics. 2009 May 29;10:253. doi: 10.1186/1471-2164-10-253.

PMID:
19480707
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa.

Wei LQ, Xu WY, Deng ZY, Su Z, Xue Y, Wang T.

BMC Genomics. 2010 May 28;11:338. doi: 10.1186/1471-2164-11-338.

PMID:
20507633
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Arabidopsis transcript profiling on Affymetrix GeneChip arrays.

Hennig L, Menges M, Murray JA, Gruissem W.

Plant Mol Biol. 2003 Nov;53(4):457-65.

PMID:
15010612
[PubMed - indexed for MEDLINE]
14.

A dynamic gene expression atlas covering the entire life cycle of rice.

Wang L, Xie W, Chen Y, Tang W, Yang J, Ye R, Liu L, Lin Y, Xu C, Xiao J, Zhang Q.

Plant J. 2010 Mar;61(5):752-66. doi: 10.1111/j.1365-313X.2009.04100.x. Epub 2009 Dec 9.

PMID:
20003165
[PubMed - indexed for MEDLINE]
15.

High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations.

Wallace JC, Korth MJ, Paeper B, Proll SC, Thomas MJ, Magness CL, Iadonato SP, Nelson C, Katze MG.

BMC Genomics. 2007 Jan 23;8:28.

PMID:
17244361
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis.

Allemeersch J, Durinck S, Vanderhaeghen R, Alard P, Maes R, Seeuws K, Bogaert T, Coddens K, Deschouwer K, Van Hummelen P, Vuylsteke M, Moreau Y, Kwekkeboom J, Wijfjes AH, May S, Beynon J, Hilson P, Kuiper MT.

Plant Physiol. 2005 Feb;137(2):588-601.

PMID:
15710687
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Arabidopsis to rice. Applying knowledge from a weed to enhance our understanding of a crop species.

Rensink WA, Buell CR.

Plant Physiol. 2004 Jun;135(2):622-9. Review.

PMID:
15208410
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Transcript profiling of common bean (Phaseolus vulgaris L.) using the GeneChip Soybean Genome Array: optimizing analysis by masking biased probes.

Yang SS, Valdés-López O, Xu WW, Bucciarelli B, Gronwald JW, Hernández G, Vance CP.

BMC Plant Biol. 2010 May 7;10:85. doi: 10.1186/1471-2229-10-85.

PMID:
20459672
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Use of the Affymetrix Human GeneChip array and genomic DNA hybridisation probe selection to study ovine transcriptomes.

Graham NS, May ST, Daniel ZC, Emmerson ZF, Brameld JM, Parr T.

Animal. 2011 May;5(6):861-6. doi: 10.1017/S1751731110002533.

PMID:
22440025
[PubMed]
20.

A Brassica exon array for whole-transcript gene expression profiling.

Love CG, Graham NS, O Lochlainn S, Bowen HC, May ST, White PJ, Broadley MR, Hammond JP, King GJ.

PLoS One. 2010 Sep 16;5(9). pii: e12812. doi: 10.1371/journal.pone.0012812.

PMID:
20862292
[PubMed - indexed for MEDLINE]
Free PMC Article

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