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Results: 1 to 20 of 97

1.

A latent variable approach for meta-analysis of gene expression data from multiple microarray experiments.

Choi H, Shen R, Chinnaiyan AM, Ghosh D.

BMC Bioinformatics. 2007 Sep 27;8:364.

PMID:
17900369
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

COPA--cancer outlier profile analysis.

MacDonald JW, Ghosh D.

Bioinformatics. 2006 Dec 1;22(23):2950-1. Epub 2006 Aug 7.

PMID:
16895932
[PubMed - indexed for MEDLINE]
Free Article
3.

Independent component analysis-based penalized discriminant method for tumor classification using gene expression data.

Huang DS, Zheng CH.

Bioinformatics. 2006 Aug 1;22(15):1855-62. Epub 2006 May 18.

PMID:
16709589
[PubMed - indexed for MEDLINE]
Free Article
4.

Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation.

Smith DD, Saetrom P, Snøve O Jr, Lundberg C, Rivas GE, Glackin C, Larson GP.

BMC Bioinformatics. 2008 Jan 28;9:63. doi: 10.1186/1471-2105-9-63.

PMID:
18226260
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Cross platform microarray analysis for robust identification of differentially expressed genes.

Bosotti R, Locatelli G, Healy S, Scacheri E, Sartori L, Mercurio C, Calogero R, Isacchi A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S5.

PMID:
17430572
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A GMM-IG framework for selecting genes as expression panel biomarkers.

Wang M, Chen JY.

Artif Intell Med. 2010 Feb-Mar;48(2-3):75-82. doi: 10.1016/j.artmed.2009.07.006. Epub 2009 Dec 8.

PMID:
20004087
[PubMed - indexed for MEDLINE]
7.

Codelink: an R package for analysis of GE healthcare gene expression bioarrays.

Diez D, Alvarez R, Dopazo A.

Bioinformatics. 2007 May 1;23(9):1168-9. Epub 2007 Mar 7.

PMID:
17344240
[PubMed - indexed for MEDLINE]
Free Article
8.

Significance analysis of functional categories in gene expression studies: a structured permutation approach.

Barry WT, Nobel AB, Wright FA.

Bioinformatics. 2005 May 1;21(9):1943-9. Epub 2005 Jan 12.

PMID:
15647293
[PubMed - indexed for MEDLINE]
Free Article
9.

Investigation of self-organizing oscillator networks for use in clustering microarray data.

Salem SA, Jack LB, Nandi AK.

IEEE Trans Nanobioscience. 2008 Mar;7(1):65-79. doi: 10.1109/TNB.2008.2000151.

PMID:
18334457
[PubMed - indexed for MEDLINE]
10.

Group testing for pathway analysis improves comparability of different microarray datasets.

Manoli T, Gretz N, Gröne HJ, Kenzelmann M, Eils R, Brors B.

Bioinformatics. 2006 Oct 15;22(20):2500-6. Epub 2006 Aug 7.

PMID:
16895928
[PubMed - indexed for MEDLINE]
Free Article
11.

Practical FDR-based sample size calculations in microarray experiments.

Hu J, Zou F, Wright FA.

Bioinformatics. 2005 Aug 1;21(15):3264-72. Epub 2005 Jun 2.

PMID:
15932903
[PubMed - indexed for MEDLINE]
Free Article
12.

MAID : an effect size based model for microarray data integration across laboratories and platforms.

Borozan I, Chen L, Paeper B, Heathcote JE, Edwards AM, Katze M, Zhang Z, McGilvray ID.

BMC Bioinformatics. 2008 Jul 10;9:305. doi: 10.1186/1471-2105-9-305.

PMID:
18616827
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

FM-test: a fuzzy-set-theory-based approach to differential gene expression data analysis.

Liang LR, Lu S, Wang X, Lu Y, Mandal V, Patacsil D, Kumar D.

BMC Bioinformatics. 2006 Dec 12;7 Suppl 4:S7.

PMID:
17217525
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A copula approach for detecting prognostic genes associated with survival outcome in microarray studies.

Owzar K, Jung SH, Sen PK.

Biometrics. 2007 Dec;63(4):1089-98. Epub 2007 May 2.

PMID:
17484778
[PubMed - indexed for MEDLINE]
15.

BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips.

Turro E, Bochkina N, Hein AM, Richardson S.

BMC Bioinformatics. 2007 Nov 12;8:439.

PMID:
17997843
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Probabilistic segmentation and intensity estimation for microarray images.

Gottardo R, Besag J, Stephens M, Murua A.

Biostatistics. 2006 Jan;7(1):85-99. Epub 2005 Jul 27.

PMID:
16049139
[PubMed - indexed for MEDLINE]
Free Article
17.

Gene selection in cancer classification using sparse logistic regression with Bayesian regularization.

Cawley GC, Talbot NL.

Bioinformatics. 2006 Oct 1;22(19):2348-55. Epub 2006 Jul 14.

PMID:
16844704
[PubMed - indexed for MEDLINE]
Free Article
18.

Vbmp: variational Bayesian Multinomial Probit Regression for multi-class classification in R.

Lama N, Girolami M.

Bioinformatics. 2008 Jan 1;24(1):135-6. Epub 2007 Nov 14.

PMID:
18003643
[PubMed - indexed for MEDLINE]
Free Article
19.

Annotation-based distance measures for patient subgroup discovery in clinical microarray studies.

Lottaz C, Toedling J, Spang R.

Bioinformatics. 2007 Sep 1;23(17):2256-64. Epub 2007 Jun 22.

PMID:
17586546
[PubMed - indexed for MEDLINE]
Free Article
20.

A unified framework for finding differentially expressed genes from microarray experiments.

Shaik JS, Yeasin M.

BMC Bioinformatics. 2007 Sep 18;8:347.

PMID:
17877806
[PubMed - indexed for MEDLINE]
Free PMC Article
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