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Results: 1 to 20 of 260

1.

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pè ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quétier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization.

Nature. 2007 Sep 27;449(7161):463-7. Epub 2007 Aug 26.

PMID:
17721507
[PubMed - indexed for MEDLINE]
2.

Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome.

Cenci A, Combes MC, Lashermes P.

Mol Genet Genomics. 2010 May;283(5):493-501. doi: 10.1007/s00438-010-0534-7. Epub 2010 Apr 2.

PMID:
20361338
[PubMed - indexed for MEDLINE]
3.

Neutral invertases in grapevine and comparative analysis with Arabidopsis, poplar and rice.

Nonis A, Ruperti B, Pierasco A, Canaguier A, Adam-Blondon AF, Di Gaspero G, Vizzotto G.

Planta. 2008 Dec;229(1):129-42. doi: 10.1007/s00425-008-0815-0. Epub 2008 Sep 18.

PMID:
18800225
[PubMed - indexed for MEDLINE]
4.

Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes.

Guyot R, de la Mare M, Viader V, Hamon P, Coriton O, Bustamante-Porras J, Poncet V, Campa C, Hamon S, de Kochko A.

BMC Plant Biol. 2009 Feb 25;9:22. doi: 10.1186/1471-2229-9-22.

PMID:
19243618
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The alternative oxidase family of Vitis vinifera reveals an attractive model to study the importance of genomic design.

Costa JH, de Melo DF, Gouveia Z, Cardoso HG, Peixe A, Arnholdt-Schmitt B.

Physiol Plant. 2009 Dec;137(4):553-65. doi: 10.1111/j.1399-3054.2009.01267.x. Epub 2009 Jul 6.

PMID:
19682279
[PubMed - indexed for MEDLINE]
6.

The evolution of plant genomes: scaling up from a population perspective.

Flowers JM, Purugganan MD.

Curr Opin Genet Dev. 2008 Dec;18(6):565-70. doi: 10.1016/j.gde.2008.11.005. Epub 2009 Jan 7. Review.

PMID:
19131240
[PubMed - indexed for MEDLINE]
7.

A draft sequence of the rice genome (Oryza sativa L. ssp. indica).

Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Huang X, Li W, Li J, Liu Z, Li L, Liu J, Qi Q, Liu J, Li L, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Wang J, Zhao W, Li P, Chen W, Wang X, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L, Yuan L, Yang H.

Science. 2002 Apr 5;296(5565):79-92.

PMID:
11935017
[PubMed - indexed for MEDLINE]
Free Article
8.

Genome-wide analysis of MIKCC-type MADS box genes in grapevine.

Díaz-Riquelme J, Lijavetzky D, Martínez-Zapater JM, Carmona MJ.

Plant Physiol. 2009 Jan;149(1):354-69. doi: 10.1104/pp.108.131052. Epub 2008 Nov 7.

PMID:
18997115
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Conservation and divergence of microRNAs in Populus.

Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE.

BMC Genomics. 2007 Dec 31;8:481. doi: 10.1186/1471-2164-8-481.

PMID:
18166134
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events.

Bowers JE, Chapman BA, Rong J, Paterson AH.

Nature. 2003 Mar 27;422(6930):433-8.

PMID:
12660784
[PubMed - indexed for MEDLINE]
11.

The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants.

Notsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, Hirai A, Kadowaki K.

Mol Genet Genomics. 2002 Dec;268(4):434-45. Epub 2002 Nov 1.

PMID:
12471441
[PubMed - indexed for MEDLINE]
12.

Unique genes in plants: specificities and conserved features throughout evolution.

Armisén D, Lecharny A, Aubourg S.

BMC Evol Biol. 2008 Oct 10;8:280. doi: 10.1186/1471-2148-8-280.

PMID:
18847470
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.

Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, Wang Y, Wang J.

J Genet Genomics. 2008 Feb;35(2):105-18. doi: 10.1016/S1673-8527(08)60016-8.

PMID:
18407058
[PubMed - indexed for MEDLINE]
14.

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels.

Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, dePamphilis CW.

BMC Evol Biol. 2010 Feb 24;10:61. doi: 10.1186/1471-2148-10-61.

PMID:
20181251
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evidence for an ancient whole-genome duplication event in rice and other cereals.

Tian CG, Xiong YQ, Liu TY, Sun SH, Chen LB, Chen MS.

Yi Chuan Xue Bao. 2005 May;32(5):519-27.

PMID:
16018264
[PubMed - indexed for MEDLINE]
16.

Towards improved reconstruction of ancestral gene order in angiosperm phylogeny.

Sankoff D, Zheng C, Wall PK, dePamphilis C, Leebens-Mack J, Albert VA.

J Comput Biol. 2009 Oct;16(10):1353-67. doi: 10.1089/cmb.2009.0103.

PMID:
19803735
[PubMed - indexed for MEDLINE]
17.

Molecular evolution of the rice miR395 gene family.

Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L.

Cell Res. 2005 Aug;15(8):631-8.

PMID:
16117853
[PubMed - indexed for MEDLINE]
Free Article
18.

Use of genomic history to improve phylogeny and understanding of births and deaths in a gene family.

Sampedro J, Lee Y, Carey RE, dePamphilis C, Cosgrove DJ.

Plant J. 2005 Nov;44(3):409-19.

PMID:
16236151
[PubMed - indexed for MEDLINE]
19.

Genome-wide comparative analysis of putative bidirectional promoters from rice, Arabidopsis and Populus.

Dhadi SR, Krom N, Ramakrishna W.

Gene. 2009 Jan 15;429(1-2):65-73. doi: 10.1016/j.gene.2008.09.034. Epub 2008 Oct 11.

PMID:
18973799
[PubMed - indexed for MEDLINE]
20.

Characterization and evolution of microRNA genes derived from repetitive elements and duplication events in plants.

Sun J, Zhou M, Mao Z, Li C.

PLoS One. 2012;7(4):e34092. doi: 10.1371/journal.pone.0034092. Epub 2012 Apr 16.

PMID:
22523544
[PubMed - indexed for MEDLINE]
Free PMC Article

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