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Results: 1 to 20 of 105

Similar articles for PubMed (Select 17717035)

1.

Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach.

Buendia P, Narasimhan G.

Bioinformatics. 2007 Nov 15;23(22):2993-3000. Epub 2007 Aug 23.

2.
3.

Serial evolutionary networks of within-patient HIV-1 sequences reveal patterns of evolution of X4 strains.

Buendia P, Narasimhan G.

BMC Syst Biol. 2009 Jun 16;3:62. doi: 10.1186/1752-0509-3-62.

4.

Robust inference of positive selection from recombining coding sequences.

Scheffler K, Martin DP, Seoighe C.

Bioinformatics. 2006 Oct 15;22(20):2493-9. Epub 2006 Aug 7.

5.

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.

Paraskevis D, Deforche K, Lemey P, Magiorkinis G, Hatzakis A, Vandamme AM.

Bioinformatics. 2005 Apr 1;21(7):1274-5. Epub 2004 Nov 16.

6.

Computing recombination networks from binary sequences.

Huson DH, Kloepper TH.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii159-65.

7.

A novel feature-based method for whole genome phylogenetic analysis without alignment: application to HEV genotyping and subtyping.

Liu Z, Meng J, Sun X.

Biochem Biophys Res Commun. 2008 Apr 4;368(2):223-30. doi: 10.1016/j.bbrc.2008.01.070. Epub 2008 Jan 28.

PMID:
18230342
8.

Using PEBBLE for the evolutionary analysis of serially sampled molecular sequences.

Goode M, Rodrigo AG.

Curr Protoc Bioinformatics. 2004 May;Chapter 6:Unit 6.8. doi: 10.1002/0471250953.bi0608s05.

PMID:
18428729
9.

GARD: a genetic algorithm for recombination detection.

Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD.

Bioinformatics. 2006 Dec 15;22(24):3096-8. Epub 2006 Nov 16.

11.

Detecting interspecific recombination with a pruned probabilistic divergence measure.

Husmeier D, Wright F, Milne I.

Bioinformatics. 2005 May 1;21(9):1797-806. Epub 2004 Nov 30.

12.

Novel methodology for construction and pruning of quasi-median networks.

Ayling SC, Brown TA.

BMC Bioinformatics. 2008 Feb 25;9:115. doi: 10.1186/1471-2105-9-115.

13.

Dual multiple change-point model leads to more accurate recombination detection.

Minin VN, Dorman KS, Fang F, Suchard MA.

Bioinformatics. 2005 Jul 1;21(13):3034-42. Epub 2005 May 24.

14.

The role of internal node sequences and the molecular clock in the analysis of serially-sampled data.

Buendia P, Collins TM, Narasimhan G.

Int J Bioinform Res Appl. 2008;4(1):107-21.

PMID:
18283032
15.

Reconstructing recombination network from sequence data: the small parsimony problem.

Nguyen CT, Nguyen NB, Sung WK, Zhang L.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jul-Sep;4(3):394-402.

PMID:
17666759
16.

Annotation of selection strengths in viral genomes.

McCauley S, de Groot S, Mailund T, Hein J.

Bioinformatics. 2007 Nov 15;23(22):2978-86. Epub 2007 Oct 5.

17.

Homology assessment and molecular sequence alignment.

Phillips AJ.

J Biomed Inform. 2006 Feb;39(1):18-33. Epub 2005 Dec 9. Review.

18.

Inferring horizontal transfers in the presence of rearrangements by the minimum evolution criterion.

Birin H, Gal-Or Z, Elias I, Tuller T.

Bioinformatics. 2008 Mar 15;24(6):826-32. doi: 10.1093/bioinformatics/btn024. Epub 2008 Jan 18.

19.

RB-finder: an improved distance-based sliding window method to detect recombination breakpoints.

Lee WH, Sung WK.

J Comput Biol. 2008 Sep;15(7):881-98. doi: 10.1089/cmb.2007.0154.

PMID:
18707535
20.

Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains.

Sinsheimer JS, Suchard MA, Dorman KS, Fang F, Weiss RE.

Appl Bioinformatics. 2003;2(3):131-44. Review.

PMID:
15130798
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