Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 129

1.

Automated discovery of functional generality of human gene expression programs.

Gerber GK, Dowell RD, Jaakkola TS, Gifford DK.

PLoS Comput Biol. 2007 Aug;3(8):e148. Epub 2007 Jun 13.

PMID:
17696603
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Conditional clustering of temporal expression profiles.

Wang L, Montano M, Rarick M, Sebastiani P.

BMC Bioinformatics. 2008 Mar 11;9:147. doi: 10.1186/1471-2105-9-147.

PMID:
18334028
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.

Chou JW, Zhou T, Kaufmann WK, Paules RS, Bushel PR.

BMC Bioinformatics. 2007 Nov 2;8:427.

PMID:
17980031
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

EDISA: extracting biclusters from multiple time-series of gene expression profiles.

Supper J, Strauch M, Wanke D, Harter K, Zell A.

BMC Bioinformatics. 2007 Sep 12;8:334.

PMID:
17850657
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Query-driven module discovery in microarray data.

Dhollander T, Sheng Q, Lemmens K, De Moor B, Marchal K, Moreau Y.

Bioinformatics. 2007 Oct 1;23(19):2573-80. Epub 2007 Aug 8.

PMID:
17686800
[PubMed - indexed for MEDLINE]
Free Article
6.

Hierarchical tree snipping: clustering guided by prior knowledge.

Dotan-Cohen D, Melkman AA, Kasif S.

Bioinformatics. 2007 Dec 15;23(24):3335-42. Epub 2007 Nov 7.

PMID:
17989094
[PubMed - indexed for MEDLINE]
Free Article
7.

Combining sequence and time series expression data to learn transcriptional modules.

Kundaje A, Middendorf M, Gao F, Wiggins C, Leslie C.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Jul-Sep;2(3):194-202.

PMID:
17044183
[PubMed - indexed for MEDLINE]
8.

TimeClust: a clustering tool for gene expression time series.

Magni P, Ferrazzi F, Sacchi L, Bellazzi R.

Bioinformatics. 2008 Feb 1;24(3):430-2. Epub 2007 Dec 6.

PMID:
18065427
[PubMed - indexed for MEDLINE]
Free Article
9.

Continuous hidden process model for time series expression experiments.

Shi Y, Klustein M, Simon I, Mitchell T, Bar-Joseph Z.

Bioinformatics. 2007 Jul 1;23(13):i459-67.

PMID:
17646331
[PubMed - indexed for MEDLINE]
Free Article
10.

Applying dynamic Bayesian networks to perturbed gene expression data.

Dojer N, Gambin A, Mizera A, Wilczyński B, Tiuryn J.

BMC Bioinformatics. 2006 May 8;7:249.

PMID:
16681847
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory.

Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J.

BMC Bioinformatics. 2007 Aug 14;8:299.

PMID:
17697349
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Application of simulated annealing to the biclustering of gene expression data.

Bryan K, Cunningham P, Bolshakova N.

IEEE Trans Inf Technol Biomed. 2006 Jul;10(3):519-25.

PMID:
16871720
[PubMed - indexed for MEDLINE]
13.

Systematic gene function prediction from gene expression data by using a fuzzy nearest-cluster method.

Li XL, Tan YC, Ng SK.

BMC Bioinformatics. 2006 Dec 12;7 Suppl 4:S23.

PMID:
17217516
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Clustering biological annotations and gene expression data to identify putatively co-regulated biological processes.

Henegar C, Cancello R, Rome S, Vidal H, Clément K, Zucker JD.

J Bioinform Comput Biol. 2006 Aug;4(4):833-52.

PMID:
17007070
[PubMed - indexed for MEDLINE]
15.

Symmetric and asymmetric multi-modality biclustering analysis for microarray data matrix.

Kung SY, Mak MW, Tagkopoulos I.

J Bioinform Comput Biol. 2006 Apr;4(2):275-98.

PMID:
16819784
[PubMed - indexed for MEDLINE]
16.

Multi-metric and multi-substructure biclustering analysis for gene expression data.

Kung SY, Mak MW, Tagkopoulos I.

Proc IEEE Comput Syst Bioinform Conf. 2005:123-34.

PMID:
16447970
[PubMed - indexed for MEDLINE]
17.

Learning regulatory programs that accurately predict differential expression with MEDUSA.

Kundaje A, Lianoglou S, Li X, Quigley D, Arias M, Wiggins CH, Zhang L, Leslie C.

Ann N Y Acad Sci. 2007 Dec;1115:178-202. Epub 2007 Oct 12.

PMID:
17934055
[PubMed - indexed for MEDLINE]
18.

Construction of a reference gene association network from multiple profiling data: application to data analysis.

Ucar D, Neuhaus I, Ross-MacDonald P, Tilford C, Parthasarathy S, Siemers N, Ji RR.

Bioinformatics. 2007 Oct 15;23(20):2716-24. Epub 2007 Sep 10.

PMID:
17846039
[PubMed - indexed for MEDLINE]
Free Article
19.

Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles.

Tien YJ, Lee YS, Wu HM, Chen CH.

BMC Bioinformatics. 2008 Mar 20;9:155. doi: 10.1186/1471-2105-9-155.

PMID:
18366693
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Coexpressionfinder: a new algorithm for finding groups of coexpressed genes.

Rogov SI, Momynaliev KT, Govorun VM.

J Bioinform Comput Biol. 2006 Aug;4(4):853-64.

PMID:
17007071
[PubMed - indexed for MEDLINE]
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk