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Items: 1 to 20 of 120


Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors.

Wang D, Sung HM, Wang TY, Huang CJ, Yang P, Chang T, Wang YC, Tseng DL, Wu JP, Lee TC, Shih MC, Li WH.

Genome Res. 2007 Aug;17(8):1161-9. Epub 2007 Jul 5.


Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast.

Chang YW, Robert Liu FG, Yu N, Sung HM, Yang P, Wang D, Huang CJ, Shih MC, Li WH.

Mol Biol Evol. 2008 Sep;25(9):1863-75. doi: 10.1093/molbev/msn138. Epub 2008 Jun 23.


Roles of trans and cis variation in yeast intraspecies evolution of gene expression.

Sung HM, Wang TY, Wang D, Huang YS, Wu JP, Tsai HK, Tzeng J, Huang CJ, Lee YC, Yang P, Hsu J, Chang T, Cho CY, Weng LC, Lee TC, Chang TH, Li WH, Shih MC.

Mol Biol Evol. 2009 Nov;26(11):2533-8. doi: 10.1093/molbev/msp171. Epub 2009 Jul 31.


Effects of cis and trans regulatory variations on the expression divergence of heat shock response genes between yeast strains.

Li CM, Tzeng JN, Sung HM.

Gene. 2012 Sep 10;506(1):93-7. doi: 10.1016/j.gene.2012.06.034. Epub 2012 Jul 1.


A yeast hybrid provides insight into the evolution of gene expression regulation.

Tirosh I, Reikhav S, Levy AA, Barkai N.

Science. 2009 May 1;324(5927):659-62. doi: 10.1126/science.1169766.


Inheritance of gene expression level and selective constraints on trans- and cis-regulatory changes in yeast.

Schaefke B, Emerson JJ, Wang TY, Lu MY, Hsieh LC, Li WH.

Mol Biol Evol. 2013 Sep;30(9):2121-33. doi: 10.1093/molbev/mst114. Epub 2013 Jun 22.


Genetic dissection of transcriptional regulation in budding yeast.

Brem RB, Yvert G, Clinton R, Kruglyak L.

Science. 2002 Apr 26;296(5568):752-5. Epub 2002 Mar 28.


Evidences for increased expression variation of duplicate genes in budding yeast: from cis- to trans-regulation effects.

Dong D, Yuan Z, Zhang Z.

Nucleic Acids Res. 2011 Feb;39(3):837-47. doi: 10.1093/nar/gkq874. Epub 2010 Oct 8.


Natural selection on cis and trans regulation in yeasts.

Emerson JJ, Hsieh LC, Sung HM, Wang TY, Huang CJ, Lu HH, Lu MY, Wu SH, Li WH.

Genome Res. 2010 Jun;20(6):826-36. doi: 10.1101/gr.101576.109. Epub 2010 May 5.


Correlated changes between regulatory cis elements and condition-specific expression in paralogous gene families.

Singh LN, Hannenhalli S.

Nucleic Acids Res. 2010 Jan;38(3):738-49. doi: 10.1093/nar/gkp989. Epub 2009 Nov 19.


The evolution of gene expression QTL in Saccharomyces cerevisiae.

Ronald J, Akey JM.

PLoS One. 2007 Aug 1;2(7):e678.


Genome-wide analysis of the cis-regulatory modules of divergent gene pairs in yeast.

Su CH, Shih CH, Chang TH, Tsai HK.

Genomics. 2010 Dec;96(6):352-61. doi: 10.1016/j.ygeno.2010.08.008. Epub 2010 Sep 6.


Histone modification pattern evolution after yeast gene duplication.

Zou Y, Su Z, Huang W, Gu X.

BMC Evol Biol. 2012 Jul 9;12:111. doi: 10.1186/1471-2148-12-111.


A second iron-regulatory system in yeast independent of Aft1p.

Rutherford JC, Jaron S, Ray E, Brown PO, Winge DR.

Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14322-7.


Uncovering genetic regulatory network divergence between duplicate genes using yeast eQTL landscape.

Zou Y, Su Z, Yang J, Zeng Y, Gu X.

J Exp Zool B Mol Dev Evol. 2009 Nov 15;312(7):722-33. doi: 10.1002/jez.b.21290.


Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences.

Tirosh I, Sigal N, Barkai N.

Mol Syst Biol. 2010 May 11;6:365. doi: 10.1038/msb.2010.20.


Genetic properties influencing the evolvability of gene expression.

Landry CR, Lemos B, Rifkin SA, Dickinson WJ, Hartl DL.

Science. 2007 Jul 6;317(5834):118-21. Epub 2007 May 24.


Local regulatory variation in Saccharomyces cerevisiae.

Ronald J, Brem RB, Whittle J, Kruglyak L.

PLoS Genet. 2005 Aug;1(2):e25. Epub 2005 Aug 19.


The rapid evolution of X-linked male-biased gene expression and the large-X effect in Drosophila yakuba, D. santomea, and their hybrids.

Llopart A.

Mol Biol Evol. 2012 Dec;29(12):3873-86. doi: 10.1093/molbev/mss190. Epub 2012 Jul 26.

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