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Results: 1 to 20 of 96

1.

Discovery of similar regions on protein surfaces.

Bock ME, Garutti C, Guerra C.

J Comput Biol. 2007 Apr;14(3):285-99.

PMID:
17563312
[PubMed - indexed for MEDLINE]
2.

On the nature of cavities on protein surfaces: application to the identification of drug-binding sites.

Nayal M, Honig B.

Proteins. 2006 Jun 1;63(4):892-906.

PMID:
16477622
[PubMed - indexed for MEDLINE]
3.

Graph-theoretical comparison of protein surfaces reveals potential determinants of cross-reactivity and the molecular mimicry.

Iakhiaev MA, Iakhiaev AV.

Mol Immunol. 2010 Jan;47(4):719-25. doi: 10.1016/j.molimm.2009.10.020. Epub 2009 Nov 25.

PMID:
19939450
[PubMed - indexed for MEDLINE]
4.

Effective labeling of molecular surface points for cavity detection and location of putative binding sites.

Bock ME, Garutti C, Guerra C.

Comput Syst Bioinformatics Conf. 2007;6:263-74.

PMID:
17951830
[PubMed - indexed for MEDLINE]
Free Article
5.

Characterization of local geometry of protein surfaces with the visibility criterion.

Li B, Turuvekere S, Agrawal M, La D, Ramani K, Kihara D.

Proteins. 2008 May 1;71(2):670-83.

PMID:
17975834
[PubMed - indexed for MEDLINE]
6.

Binding response: a descriptor for selecting ligand binding site on protein surfaces.

Zhong S, MacKerell AD Jr.

J Chem Inf Model. 2007 Nov-Dec;47(6):2303-15. Epub 2007 Sep 27.

PMID:
17900106
[PubMed - indexed for MEDLINE]
7.

Recognition of functional sites in protein structures.

Shulman-Peleg A, Nussinov R, Wolfson HJ.

J Mol Biol. 2004 Jun 4;339(3):607-33.

PMID:
15147845
[PubMed - indexed for MEDLINE]
8.

Identification of protein functional surfaces by the concept of a split pocket.

Tseng YY, Li WH.

Proteins. 2009 Sep;76(4):959-76. doi: 10.1002/prot.22402.

PMID:
19326458
[PubMed - indexed for MEDLINE]
9.

Identification of protein functions from a molecular surface database, eF-site.

Kinoshita K, Furui J, Nakamura H.

J Struct Funct Genomics. 2002;2(1):9-22.

PMID:
12836670
[PubMed - indexed for MEDLINE]
10.

New method for fast and accurate binding-site identification and analysis.

Halgren T.

Chem Biol Drug Des. 2007 Feb;69(2):146-8.

PMID:
17381729
[PubMed - indexed for MEDLINE]
11.

Network scaling invariants help to elucidate basic topological principles of proteins.

Krishnan A, Giuliani A, Zbilut JP, Tomita M.

J Proteome Res. 2007 Oct;6(10):3924-34. Epub 2007 Sep 12.

PMID:
17850063
[PubMed - indexed for MEDLINE]
12.

AI-based algorithms for protein surface comparisons.

Pickering SJ, Bulpitt AJ, Efford N, Gold ND, Westhead DR.

Comput Chem. 2001 Dec;26(1):79-84.

PMID:
11765855
[PubMed - indexed for MEDLINE]
13.

Predicting gene ontology functions from protein's regional surface structures.

Liu ZP, Wu LY, Wang Y, Chen L, Zhang XS.

BMC Bioinformatics. 2007 Dec 11;8:475.

PMID:
18070366
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

[Role of surface distribution of hydrophobic groups in the assembly of protein quaternary structure].

Rashin AA, Iudman BKh.

Mol Biol (Mosk). 1979 May-Jun;13(3):698-712. Russian.

PMID:
460213
[PubMed - indexed for MEDLINE]
15.

Pocket extraction on proteins via the Voronoi diagram of spheres.

Kim D, Cho CH, Cho Y, Ryu J, Bhak J, Kim DS.

J Mol Graph Model. 2008 Apr;26(7):1104-12. Epub 2007 Oct 7.

PMID:
18023220
[PubMed - indexed for MEDLINE]
16.

Importance of molecular computer modeling in anticancer drug development.

Geromichalos GD.

J BUON. 2007 Sep;12 Suppl 1:S101-18. Review.

PMID:
17935268
[PubMed - indexed for MEDLINE]
17.

A fourier fingerprint-based method for protein surface representation.

Bayley MJ, Gardiner EJ, Willett P, Artymiuk PJ.

J Chem Inf Model. 2005 May-Jun;45(3):696-707.

PMID:
15921459
[PubMed - indexed for MEDLINE]
18.

VASCo: computation and visualization of annotated protein surface contacts.

Steinkellner G, Rader R, Thallinger GG, Kratky C, Gruber K.

BMC Bioinformatics. 2009 Jan 24;10:32. doi: 10.1186/1471-2105-10-32.

PMID:
19166624
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Approximation and characterization of molecular surfaces.

Duncan BS, Olson AJ.

Biopolymers. 1993 Feb;33(2):219-29.

PMID:
8485296
[PubMed - indexed for MEDLINE]
20.

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions.

Laskowski RA.

J Mol Graph. 1995 Oct;13(5):323-30, 307-8.

PMID:
8603061
[PubMed - indexed for MEDLINE]

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