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17562014,17254805,20206277,19958489,22639929,24981558,18675585,20025983,20416386,21473796,15969723,11421650,18723096,16244129,19059352,12069552,18342242,16282167,19489124,22142737,19861637,19121402,11399147,22421212,16523691,16876439,23770573,10508550,11821917,12967605,23541839,15186825,15955516,22846682,23800668,20197098,11920135,24560917,26699541,18824112,15315687,17174109,20601104,16876445,15904853,17582716,19577013,23892412,17028950,11697919,17459886,22591516,22677601,22510309,11083934,26196389,21091563,15490579,18781354,22465401,16095925,15769870,19198775,15964218,21290822,18162409,20152913,10679161,25192405,22366368,30153502,20863897,16845103,30606693,24780747,29716521,15022773,24103336,23403224,23325808,16603820,24863571,23723988,25284389,26248563,26231382,18271961,23467005,19294000,18850061,24372711,17043397,23980762,25536165,26200115,32899108,20035628,23709523,25440713,23270146,24089331,27261253,21933414,23249327,23402662,24302699,25661717,20130746,25243758,22198224,22272344,23282079,21558211,24530869,29377161,23359716,28078711,21558212,28952249,32171235,11018151,25863336,25377266,24942778,17933769,25215300,23237720,27889948,23880733,30392423,15723254,26330076,27020198,30714887,26614357,23906600,17286216,9501501,12845443,26953740,23420176,28439758,24120448,25600709,15983872,24260162,16547410,18655698,26249397,31170912,23935110,37022772,22433429,21299898,21712230,26322499,30092340,28344106,24881812,23314963,31185298,19239678,28445091,23667051,24128928,11122468,14993321,28782594,31196521,25250663,25209640,17460809,23935025,18304338,28441395,12213231,15696367,14980972,21347329,33595803,33140895,25534258,22046320,26436500,29397500,11052533,15796019,10745162,19346522,30955777,23096903,26465289,11110900,24871224,30415023,23396203,24908393,18841242,30555072,22216157,24473288,23396157,25565136,24508698,23535771,18972163,24509794,29360839,28591685,9767686,30674355,32876380,10961851,24445018,9000749,28056060,27208886,17867833,9873072,32229925,21408166,28082760,22952830,30828253,18795098,29458669,21069539,24361769,37043495,25366159,12066707,24530638,14719169,14561292,16720696,30137670,28919505,25966583,31152554,26075730,21340348,23185439,23709484,11155932,15022772,22831179,8719965,11954910,28482055,15022767,27041196,12803902,25066912,27353021,19616106,17070713,12913814,33053130,15785847,24380266,34892928,1364170,19009316,12644554,12144658,10704601,10605115,26986267,25539723,33813021,33055755,28255640,25762187,29085759,17347920,27173234,27994958,17650324,3357414,29689817,26987011,15306560,14563129,25585154,28666786,15912952,24472672,26375331,26843148,27037584,25366864,25113003,20078867,28589844,23967185,14635763,15776999,24415483,25814061,26988787,30483031,17652131,25757706,28253889,31911143,31872587,10983824,26562165,8674999,8330027,17460808,26988648,21564571,30677508,26420464,11801742,29268804,1922195,12644403,31204696,17883034,18268902,21061280,8896380,24913840,35452839,29385563,27437708,27039870,27593164,21616845,25407078,27321092,19383726,12927127,12450746,32860973,31309452,24871604,24256520,11903628,34618973,26040419,12182399,7769391,12066296,16754865,23730756,1451609,25871788,12197519,33524844,24871023,28168103,1775066,34732016,29245386,33706203,23029093,22723855,19457251,24984034,27718041,31748405,29623790,8422950,25133685,35027858,35178037,29131534,25244748,27032361,14615184,27869316,32027954,10556307,28434205,30550961,23939193,28819805,9061962,26823626,22942083,30013833,29062146,21801381,21303200,24362461,11430652,28888791,9060392,16336304,27403749,34038450,35391483,12644405,33148176,25216794,24173929,10612438,30711810,12742746,27008393,25097373,16039145,16868796,2622334,26427825,33828907,24657804,34911250,19274196,24639167,25050402,25473413,25947741,26993764,27007637,15736862,18263628,29689877,36333666,12803898,25781787,10473778,31692070,16357470,27011092,21695250,10229578,24432538,23949648,24294084,24870666,26186364,11592478,26941463,32786110,21149020,23755534,24875218,29913312,19723687,28634029,28719667,33059070,26250246,21156535,25264078,27701346,18288894,31397236,27193263,31676419,17650872,26245126,24415479,35935887,27041055,20169023,18214612,25516268,26428725,34892948,23850812,35406909,23734456,27008391,19266001,36145821,19939978,23826120,30316946,28757447,12144656,27081333,26106725,33025781,25438171,19242549,18626710,15222898,25144119,27011221,21544167,24871026,27669452,34685795,28962975,24858464,31239821,30622420,8865663,27085671,24634435,26986530,25840332,35391343,21585827,32376895,15022765,25947450,29143653,30832212,35371115,27032359,34892945,27394451,31938507,26966649,33757089,34710970,2709338,32169658,12775523,30138782,33873790,36164604,20229338,27630534,34645078,31004252,25985485,36354839,11752186,18817507,25606407,21619604,33713360,30032254,25796909,33194362,36420132,26986894,33183234,26240300,8995052,26988010,30313392,26697806,30044806,35448806,19891413,18517306,34892859,19760138,26986882,34818824,26175303,29278416,34622978,11088007,12652069,35586606,32595627,26986889,26987009,36267803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Phylogenetic reconstruction using secondary structures of Internal Transcribed Spacer 2 (ITS2, rDNA): finding the molecular and morphological gap in Caribbean gorgonian corals.

Grajales A, Aguilar C, Sánchez JA. Grajales A, et al. BMC Evol Biol. 2007 Jun 11;7:90. doi: 10.1186/1471-2148-7-90. BMC Evol Biol. 2007. PMID: 17562014 Free PMC article.

Phylogenetic hypotheses of gorgoniid octocorals according to ITS2 and their predicted RNA secondary structures.

Aguilar C, Sánchez JA. Aguilar C, et al. Mol Phylogenet Evol. 2007 Jun;43(3):774-86. doi: 10.1016/j.ympev.2006.11.005. Epub 2006 Nov 17. Mol Phylogenet Evol. 2007. PMID: 17254805

Analysis of the secondary structure of ITS transcripts in peritrich ciliates (Ciliophora, Oligohymenophorea): implications for structural evolution and phylogenetic reconstruction.

Sun P, Clamp JC, Xu D. Sun P, et al. Mol Phylogenet Evol. 2010 Jul;56(1):242-51. doi: 10.1016/j.ympev.2010.02.030. Epub 2010 Mar 2. Mol Phylogenet Evol. 2010. PMID: 20206277

Phylogenetic reconstruction using secondary structures and sequence motifs of ITS2 rDNA of Paragonimus westermani (Kerbert, 1878) Braun, 1899 (Digenea: Paragonimidae) and related species.

Prasad PK, Tandon V, Biswal DK, Goswami LM, Chatterjee A. Prasad PK, et al. BMC Genomics. 2009 Dec 3;10 Suppl 3(Suppl 3):S25. doi: 10.1186/1471-2164-10-S3-S25. BMC Genomics. 2009. PMID: 19958489 Free PMC article.

'Y'Scenedesmus (Chlorophyta, Chlorophyceae): the internal transcribed spacer 2 rRNA secondary structure re-revisited.

Markert SM, Müller T, Koetschan C, Friedl T, Wolf M. Markert SM, et al. Plant Biol (Stuttg). 2012 Nov;14(6):987-96. doi: 10.1111/j.1438-8677.2012.00576.x. Epub 2012 May 28. Plant Biol (Stuttg). 2012. PMID: 22639929

Gorgonia mariae and Antillogorgia bipinnata populations inferred from compensatory base change analysis of the internal transcribed spacer 2.

Torres-Suárez OL. Torres-Suárez OL. Mol Phylogenet Evol. 2014 Oct;79:240-8. doi: 10.1016/j.ympev.2014.06.015. Epub 2014 Jun 27. Mol Phylogenet Evol. 2014. PMID: 24981558

Analysis of the internal transcribed spacer 2 (ITS2) region of scuticociliates and related taxa (Ciliophora, Oligohymenophorea) to infer their evolution and phylogeny.

Miao M, Warren A, Song W, Wang S, Shang H, Chen Z. Miao M, et al. Protist. 2008 Oct;159(4):519-33. doi: 10.1016/j.protis.2008.05.002. Protist. 2008. PMID: 18675585

Molecular systematics of the bubblegum coral genera (Paragorgiidae, Octocorallia) and description of a new deep-sea species.

Herrera S, Baco A, Sánchez JA. Herrera S, et al. Mol Phylogenet Evol. 2010 Apr;55(1):123-135. doi: 10.1016/j.ympev.2009.12.007. Epub 2009 Dec 16. Mol Phylogenet Evol. 2010. PMID: 20025983

The analysis of rRNA sequence-structure in phylogenetics: An application to the family Pectinidae (Mollusca: Bivalvia).

Salvi D, Bellavia G, Cervelli M, Mariottini P. Salvi D, et al. Mol Phylogenet Evol. 2010 Sep;56(3):1059-67. doi: 10.1016/j.ympev.2010.04.025. Epub 2010 Apr 21. Mol Phylogenet Evol. 2010. PMID: 20416386

Molecular characterization of pouched amphistome parasites (Trematoda: Gastrothylacidae) using ribosomal ITS2 sequence and secondary structures.

Ghatani S, Shylla JA, Tandon V, Chatterjee A, Roy B. Ghatani S, et al. J Helminthol. 2012 Mar;86(1):117-24. doi: 10.1017/S0022149X11000125. Epub 2011 Apr 7. J Helminthol. 2012. PMID: 21473796

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