Similar articles for PMID: 17545197

Year	Number of Results
1999	1
2000	4
2001	3
2002	4
2003	7
2004	14
2005	22
2006	32
2007	27
2008	19
2009	29
2010	9
2011	9
2012	7
2013	2
2014	3
2015	6
2016	3
2017	1
2018	1
2022	1
2024	0

1

ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.

Nagaraj SH, Deshpande N, Gasser RB, Ranganathan S. Nagaraj SH, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W143-7. doi: 10.1093/nar/gkm378. Epub 2007 Jun 1. Nucleic Acids Res. 2007. PMID: 17545197 Free PMC article.

2

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA. Latorre M, et al. BMC Bioinformatics. 2006 Nov 23;7:513. doi: 10.1186/1471-2105-7-513. BMC Bioinformatics. 2006. PMID: 17123449 Free PMC article.

3

EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.

Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S. Masoudi-Nejad A, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W459-62. doi: 10.1093/nar/gkl066. Nucleic Acids Res. 2006. PMID: 16845049 Free PMC article.

4

A hitchhiker's guide to expressed sequence tag (EST) analysis.

Nagaraj SH, Gasser RB, Ranganathan S. Nagaraj SH, et al. Brief Bioinform. 2007 Jan;8(1):6-21. doi: 10.1093/bib/bbl015. Epub 2006 May 23. Brief Bioinform. 2007. PMID: 16772268 Review.

5

TranSeqAnnotator: large-scale analysis of transcriptomic data.

Menon R, Garg G, Gasser RB, Ranganathan S. Menon R, et al. BMC Bioinformatics. 2012;13 Suppl 17(Suppl 17):S24. doi: 10.1186/1471-2105-13-S17-S24. Epub 2012 Dec 13. BMC Bioinformatics. 2012. PMID: 23282024 Free PMC article.

6

In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches.

Nagaraj SH, Gasser RB, Nisbet AJ, Ranganathan S. Nagaraj SH, et al. BMC Bioinformatics. 2008;9 Suppl 1(Suppl 1):S10. doi: 10.1186/1471-2105-9-S1-S10. BMC Bioinformatics. 2008. PMID: 18315841 Free PMC article.

7

EST processing: from trace to sequence.

Schmid R, Blaxter M. Schmid R, et al. Methods Mol Biol. 2009;533:189-220. doi: 10.1007/978-1-60327-136-3_9. Methods Mol Biol. 2009. PMID: 19277557

8

Expressed sequence tags: analysis and annotation.

Parkinson J, Blaxter M. Parkinson J, et al. Methods Mol Biol. 2004;270:93-126. doi: 10.1385/1-59259-793-9:093. Methods Mol Biol. 2004. PMID: 15153624

9

Construction and characterization of a rock-cluster-based EST analysis pipeline.

Zhu T, Zhou J, An Y, Zhou J, Li H, Xu G, Ma D. Zhu T, et al. Comput Biol Chem. 2006 Feb;30(1):81-6. doi: 10.1016/j.compbiolchem.2005.10.003. Comput Biol Chem. 2006. PMID: 16321574

10

ESTIMA, a tool for EST management in a multi-project environment.

Kumar CG, LeDuc R, Gong G, Roinishivili L, Lewin HA, Liu L. Kumar CG, et al. BMC Bioinformatics. 2004 Nov 4;5:176. doi: 10.1186/1471-2105-5-176. BMC Bioinformatics. 2004. PMID: 15527510 Free PMC article.

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