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Items: 1 to 20 of 116

1.

Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB).

Zhang J, Finney RP, Rowe W, Edmonson M, Yang SH, Dracheva T, Jen J, Struewing JP, Buetow KH.

Genome Res. 2007 Jul;17(7):1111-7. Epub 2007 May 24.

2.

In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions.

Aouacheria A, Navratil V, López-Pérez R, Gutiérrez NC, Churkin A, Barash D, Mouchiroud D, Gautier C.

BMC Genomics. 2007 Jan 3;8:2.

3.

Automating resequencing-based detection of insertion-deletion polymorphisms.

Bhangale TR, Stephens M, Nickerson DA.

Nat Genet. 2006 Dec;38(12):1457-62. Epub 2006 Nov 19.

PMID:
17115056
4.

The Roche Cancer Genome Database (RCGDB).

Küntzer J, Eggle D, Lenhof HP, Burtscher H, Klostermann S.

Hum Mutat. 2010 Apr;31(4):407-13. doi: 10.1002/humu.21207.

PMID:
20127971
5.

Meta-analysis of indels causing human genetic disease: mechanisms of mutagenesis and the role of local DNA sequence complexity.

Chuzhanova NA, Anassis EJ, Ball EV, Krawczak M, Cooper DN.

Hum Mutat. 2003 Jan;21(1):28-44.

PMID:
12497629
6.

INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events.

Chen FC, Chen CJ, Chuang TJ.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W633-8. Epub 2007 May 21.

7.

Somatic alterations in the human cancer genome.

Weir B, Zhao X, Meyerson M.

Cancer Cell. 2004 Nov;6(5):433-8. Review.

8.

Population genetic tools: application to cancer.

Gabriel S.

Semin Oncol. 2007 Apr;34(2 Suppl 1):S21-4.

PMID:
17449348
9.

High-resolution copy number arrays in cancer and the problem of normal genome copy number variation.

Gorringe KL, Campbell IG.

Genes Chromosomes Cancer. 2008 Nov;47(11):933-8. doi: 10.1002/gcc.20595.

PMID:
18663746
10.

DigiPINS: a database for vertebrate exonic single nucleotide polymorphisms and its application to cancer association studies.

Navratil V, Penel S, Delmotte S, Mouchiroud D, Gautier C, Aouacheria A.

Biochimie. 2008 Apr;90(4):563-9. Epub 2007 Sep 29.

PMID:
17988782
11.
12.

Transposable elements in human cancers by genome-wide EST alignment.

Kim DS, Huh JW, Kim HS.

Genes Genet Syst. 2007 Apr;82(2):145-56.

13.

Variation in the human genome and the inherited basis of common disease.

Gabriel S.

Semin Oncol. 2006 Dec;33(6 Suppl 11):S46-9. Review.

PMID:
17178287
14.

Mutational analysis of gene families in human cancer.

Bardelli A, Velculescu VE.

Curr Opin Genet Dev. 2005 Feb;15(1):5-12. Review.

PMID:
15661527
15.

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.

Bioinformatics. 2007 Jul 1;23(13):i387-91.

16.

Catalogue, cause, complexity and cure; the many uses of cancer genome sequence.

Wooster R, Bachman KE.

Curr Opin Genet Dev. 2010 Jun;20(3):336-41. doi: 10.1016/j.gde.2010.03.007. Epub 2010 Apr 9. Review.

PMID:
20382522
17.

Extraction of human kinase mutations from literature, databases and genotyping studies.

Krallinger M, Izarzugaza JM, Rodriguez-Penagos C, Valencia A.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S1. doi: 10.1186/1471-2105-10-S8-S1.

18.

Genome wide identification of recessive cancer genes by combinatorial mutation analysis.

Volinia S, Mascellani N, Marchesini J, Veronese A, Ormondroyd E, Alder H, Palatini J, Negrini M, Croce CM.

PLoS One. 2008;3(10):e3380. doi: 10.1371/journal.pone.0003380. Epub 2008 Oct 10.

19.

Identification of cancer genes by mutational profiling of tumor genomes.

Benvenuti S, Arena S, Bardelli A.

FEBS Lett. 2005 Mar 21;579(8):1884-90. Review.

20.

The Human Gene Mutation Database (HGMD) and its exploitation in the study of mutational mechanisms.

Cooper DN, Stenson PD, Chuzhanova NA.

Curr Protoc Bioinformatics. 2006 Jan;Chapter 1:Unit 1.13. doi: 10.1002/0471250953.bi0113s12.

PMID:
18428754
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