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Items: 1 to 20 of 279

1.

Predicting functionally important residues from sequence conservation.

Capra JA, Singh M.

Bioinformatics. 2007 Aug 1;23(15):1875-82. Epub 2007 May 22.

2.

Inferring property selection pressure from positional residue conservation.

Hoberman R, Klein-Seetharaman J, Rosenfeld R.

Appl Bioinformatics. 2004;3(2-3):167-79.

PMID:
15693742
3.

Prediction of catalytic residues based on an overlapping amino acid classification.

Dou Y, Zheng X, Yang J, Wang J.

Amino Acids. 2010 Nov;39(5):1353-61. doi: 10.1007/s00726-010-0587-2. Epub 2010 Apr 10.

PMID:
20383542
4.

Estimating residue evolutionary conservation by introducing von Neumann entropy and a novel gap-treating approach.

Zhang SW, Zhang YL, Pan Q, Cheng YM, Chou KC.

Amino Acids. 2008 Aug;35(2):495-501. Epub 2007 Aug 21.

PMID:
17710364
5.

ConSeq: the identification of functionally and structurally important residues in protein sequences.

Berezin C, Glaser F, Rosenberg J, Paz I, Pupko T, Fariselli P, Casadio R, Ben-Tal N.

Bioinformatics. 2004 May 22;20(8):1322-4. Epub 2004 Feb 10.

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7.

INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentification.

Sankararaman S, Sjölander K.

Bioinformatics. 2008 Nov 1;24(21):2445-52. doi: 10.1093/bioinformatics/btn474. Epub 2008 Sep 6.

8.

A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor.

Brooks DJ, Fresco JR, Singh M.

Bioinformatics. 2004 Sep 22;20(14):2251-7. Epub 2004 Apr 8.

9.

Predicting protein structure classes from function predictions.

Sommer I, Rahnenführer J, Domingues FS, de Lichtenberg U, Lengauer T.

Bioinformatics. 2004 Mar 22;20(5):770-6. Epub 2004 Jan 29.

10.

Protein secondary structure: entropy, correlations and prediction.

Crooks GE, Brenner SE.

Bioinformatics. 2004 Jul 10;20(10):1603-11. Epub 2004 Feb 26.

11.

Bayesian search of functionally divergent protein subgroups and their function specific residues.

Marttinen P, Corander J, Törönen P, Holm L.

Bioinformatics. 2006 Oct 15;22(20):2466-74. Epub 2006 Jul 26.

12.

AL2CO: calculation of positional conservation in a protein sequence alignment.

Pei J, Grishin NV.

Bioinformatics. 2001 Aug;17(8):700-12.

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14.

Quantum coupled mutation finder: predicting functionally or structurally important sites in proteins using quantum Jensen-Shannon divergence and CUDA programming.

Gültas M, Düzgün G, Herzog S, Jäger SJ, Meckbach C, Wingender E, Waack S.

BMC Bioinformatics. 2014 Apr 3;15:96. doi: 10.1186/1471-2105-15-96.

15.

A quantitative analysis of interfacial amino acid conservation in protein-protein hetero complexes.

Reddy BV, Kaznessis YN.

J Bioinform Comput Biol. 2005 Oct;3(5):1137-50.

PMID:
16278951
16.

Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces.

Aytuna AS, Gursoy A, Keskin O.

Bioinformatics. 2005 Jun 15;21(12):2850-5. Epub 2005 Apr 26.

17.

Blast sampling for structural and functional analyses.

Friedrich A, Ripp R, Garnier N, Bettler E, Deléage G, Poch O, Moulinier L.

BMC Bioinformatics. 2007 Feb 23;8:62.

18.

ARCS: an aggregated related column scoring scheme for aligned sequences.

Song B, Choi JH, Chen G, Szymanski J, Zhang GQ, Tung AK, Kang J, Kim S, Yang J.

Bioinformatics. 2006 Oct 1;22(19):2326-32. Epub 2006 Jul 26.

19.

The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction.

Manning JR, Jefferson ER, Barton GJ.

BMC Bioinformatics. 2008 Jan 25;9:51. doi: 10.1186/1471-2105-9-51.

20.
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