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Results: 1 to 20 of 163

1.

Systematic functional assessment of human protein-protein interaction maps.

Chaurasia G, Herzel H, Wanker EE, Futschik ME.

Genome Inform. 2006;17(1):36-45.

PMID:
17503354
[PubMed - indexed for MEDLINE]
2.

Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness.

Li D, Li J, Ouyang S, Wang J, Wu S, Wan P, Zhu Y, Xu X, He F.

Proteomics. 2006 Jan;6(2):456-61.

PMID:
16317777
[PubMed - indexed for MEDLINE]
3.

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.

Yu H, Luscombe NM, Lu HX, Zhu X, Xia Y, Han JD, Bertin N, Chung S, Vidal M, Gerstein M.

Genome Res. 2004 Jun;14(6):1107-18.

PMID:
15173116
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Inferring protein-protein interactions through high-throughput interaction data from diverse organisms.

Liu Y, Liu N, Zhao H.

Bioinformatics. 2005 Aug 1;21(15):3279-85. Epub 2005 May 19.

PMID:
15905281
[PubMed - indexed for MEDLINE]
Free Article
5.

Comparison of human protein-protein interaction maps.

Futschik ME, Chaurasia G, Herzel H.

Bioinformatics. 2007 Mar 1;23(5):605-11. Epub 2007 Jan 19.

PMID:
17237052
[PubMed - indexed for MEDLINE]
Free Article
6.

Lethality and entropy of protein interaction networks.

Manke T, Demetrius L, Vingron M.

Genome Inform. 2005;16(1):159-63.

PMID:
16362918
[PubMed - indexed for MEDLINE]
7.

Pairwise alignment of protein interaction networks.

Koyutürk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, Grama A.

J Comput Biol. 2006 Mar;13(2):182-99.

PMID:
16597234
[PubMed - indexed for MEDLINE]
8.

The Cartographers toolbox: building bigger and better human protein interaction networks.

Sanderson CM.

Brief Funct Genomic Proteomic. 2009 Jan;8(1):1-11. doi: 10.1093/bfgp/elp003. Epub 2009 Mar 12. Review.

PMID:
19282470
[PubMed - indexed for MEDLINE]
Free Article
9.

Towards an understanding of complex protein networks.

Tucker CL, Gera JF, Uetz P.

Trends Cell Biol. 2001 Mar;11(3):102-6. Review.

PMID:
11306254
[PubMed - indexed for MEDLINE]
10.

Disorder and sequence repeats in hub proteins and their implications for network evolution.

Dosztányi Z, Chen J, Dunker AK, Simon I, Tompa P.

J Proteome Res. 2006 Nov;5(11):2985-95.

PMID:
17081050
[PubMed - indexed for MEDLINE]
11.

Interactome: gateway into systems biology.

Cusick ME, Klitgord N, Vidal M, Hill DE.

Hum Mol Genet. 2005 Oct 15;14 Spec No. 2:R171-81. Epub 2005 Sep 14. Review.

PMID:
16162640
[PubMed - indexed for MEDLINE]
Free Article
12.

A linear-time algorithm for predicting functional annotations from PPI networks.

Wu Y, Lonardi S.

J Bioinform Comput Biol. 2008 Dec;6(6):1049-65.

PMID:
19090017
[PubMed - indexed for MEDLINE]
13.

Conserved patterns of protein interaction in multiple species.

Sharan R, Suthram S, Kelley RM, Kuhn T, McCuine S, Uetz P, Sittler T, Karp RM, Ideker T.

Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):1974-9. Epub 2005 Feb 1.

PMID:
15687504
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets.

Gandhi TK, Zhong J, Mathivanan S, Karthick L, Chandrika KN, Mohan SS, Sharma S, Pinkert S, Nagaraju S, Periaswamy B, Mishra G, Nandakumar K, Shen B, Deshpande N, Nayak R, Sarker M, Boeke JD, Parmigiani G, Schultz J, Bader JS, Pandey A.

Nat Genet. 2006 Mar;38(3):285-93.

PMID:
16501559
[PubMed - indexed for MEDLINE]
15.

Effect of sampling on topology predictions of protein-protein interaction networks.

Han JD, Dupuy D, Bertin N, Cusick ME, Vidal M.

Nat Biotechnol. 2005 Jul;23(7):839-44.

PMID:
16003372
[PubMed - indexed for MEDLINE]
16.

Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

Matthews LR, Vaglio P, Reboul J, Ge H, Davis BP, Garrels J, Vincent S, Vidal M.

Genome Res. 2001 Dec;11(12):2120-6.

PMID:
11731503
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Organelle DB: a cross-species database of protein localization and function.

Wiwatwattana N, Kumar A.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D598-604.

PMID:
15608270
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Quantitative assessment of the structural bias in protein-protein interaction assays.

Björklund AK, Light S, Hedin L, Elofsson A.

Proteomics. 2008 Nov;8(22):4657-67. doi: 10.1002/pmic.200800150.

PMID:
18924110
[PubMed - indexed for MEDLINE]
19.

A computationally guided protein-interaction screen uncovers coiled-coil interactions involved in vesicular trafficking.

Zhang H, Chen J, Wang Y, Peng L, Dong X, Lu Y, Keating AE, Jiang T.

J Mol Biol. 2009 Sep 11;392(1):228-41. doi: 10.1016/j.jmb.2009.07.006. Epub 2009 Jul 8.

PMID:
19591838
[PubMed - indexed for MEDLINE]
20.

Evolution and topology in the yeast protein interaction network.

Wuchty S.

Genome Res. 2004 Jul;14(7):1310-4.

PMID:
15231746
[PubMed - indexed for MEDLINE]
Free PMC Article

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