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Results: 1 to 20 of 124

1.

Specificity in protein interactions and its relationship with sequence diversity and coevolution.

Hakes L, Lovell SC, Oliver SG, Robertson DL.

Proc Natl Acad Sci U S A. 2007 May 8;104(19):7999-8004. Epub 2007 Apr 27.

PMID:
17468399
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Predicting protein domain interactions from coevolution of conserved regions.

Kann MG, Jothi R, Cherukuri PF, Przytycka TM.

Proteins. 2007 Jun 1;67(4):811-20.

PMID:
17357158
[PubMed - indexed for MEDLINE]
3.

Correlated evolution of interacting proteins: looking behind the mirrortree.

Kann MG, Shoemaker BA, Panchenko AR, Przytycka TM.

J Mol Biol. 2009 Jan 9;385(1):91-8. doi: 10.1016/j.jmb.2008.09.078. Epub 2008 Oct 9.

PMID:
18930732
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Multifunctionality dominantly determines the rate of human housekeeping and tissue specific interacting protein evolution.

Podder S, Mukhopadhyay P, Ghosh TC.

Gene. 2009 Jun 15;439(1-2):11-6. doi: 10.1016/j.gene.2009.03.005. Epub 2009 Mar 20.

PMID:
19306918
[PubMed - indexed for MEDLINE]
5.

The human protein coevolution network.

Tillier ER, Charlebois RL.

Genome Res. 2009 Oct;19(10):1861-71. doi: 10.1101/gr.092452.109. Epub 2009 Aug 20.

PMID:
19696150
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Reducing the false positive rate in the non-parametric analysis of molecular coevolution.

CodoƱer FM, O'Dea S, Fares MA.

BMC Evol Biol. 2008 Apr 10;8:106. doi: 10.1186/1471-2148-8-106.

PMID:
18402697
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

An integrated view of molecular coevolution in protein-protein interactions.

Lovell SC, Robertson DL.

Mol Biol Evol. 2010 Nov;27(11):2567-75. doi: 10.1093/molbev/msq144. Epub 2010 Jun 14. Review.

PMID:
20551042
[PubMed - indexed for MEDLINE]
Free Article
8.

Base pairing constraints drive structural epistasis in ribosomal RNA sequences.

Dutheil JY, Jossinet F, Westhof E.

Mol Biol Evol. 2010 Aug;27(8):1868-76. doi: 10.1093/molbev/msq069. Epub 2010 Mar 8.

PMID:
20211929
[PubMed - indexed for MEDLINE]
Free Article
9.

The effect of sequence evolution on protein structural divergence.

Williams SG, Lovell SC.

Mol Biol Evol. 2009 May;26(5):1055-65. doi: 10.1093/molbev/msp020. Epub 2009 Feb 4.

PMID:
19193735
[PubMed - indexed for MEDLINE]
Free Article
10.

Coevolution of gene expression among interacting proteins.

Fraser HB, Hirsh AE, Wall DP, Eisen MB.

Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):9033-8. Epub 2004 Jun 2.

PMID:
15175431
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Evolutionary rate in the protein interaction network.

Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW.

Science. 2002 Apr 26;296(5568):750-2.

PMID:
11976460
[PubMed - indexed for MEDLINE]
Free Article
12.

Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution.

Wolf MY, Wolf YI, Koonin EV.

Biol Direct. 2008 Oct 7;3:40. doi: 10.1186/1745-6150-3-40.

PMID:
18840284
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Codep: maximizing co-evolutionary interdependencies to discover interacting proteins.

Tillier ER, Biro L, Li G, Tillo D.

Proteins. 2006 Jun 1;63(4):822-31.

PMID:
16634043
[PubMed - indexed for MEDLINE]
14.

Prediction of protein interaction based on similarity of phylogenetic trees.

Pazos F, Juan D, Izarzugaza JM, Leon E, Valencia A.

Methods Mol Biol. 2008;484:523-35. doi: 10.1007/978-1-59745-398-1_31.

PMID:
18592199
[PubMed - indexed for MEDLINE]
15.

Graphical models of protein-protein interaction specificity from correlated mutations and interaction data.

Thomas J, Ramakrishnan N, Bailey-Kellogg C.

Proteins. 2009 Sep;76(4):911-29. doi: 10.1002/prot.22398.

PMID:
19306342
[PubMed - indexed for MEDLINE]
16.

Correlated mutations contain information about protein-protein interaction.

Pazos F, Helmer-Citterich M, Ausiello G, Valencia A.

J Mol Biol. 1997 Aug 29;271(4):511-23.

PMID:
9281423
[PubMed - indexed for MEDLINE]
17.

Robust signals of coevolution of interacting residues in mammalian proteomes identified by phylogeny-aided structural analysis.

Choi SS, Li W, Lahn BT.

Nat Genet. 2005 Dec;37(12):1367-71. Epub 2005 Nov 13.

PMID:
16282975
[PubMed - indexed for MEDLINE]
18.

Compensatory change of interacting amino acids in the coevolution of transcriptional coactivator MBF1 and TATA-box-binding protein.

Liu QX, Nakashima-Kamimura N, Ikeo K, Hirose S, Gojobori T.

Mol Biol Evol. 2007 Jul;24(7):1458-63. Epub 2007 Apr 17.

PMID:
17440176
[PubMed - indexed for MEDLINE]
Free Article
19.

Correlated sequence-signatures as markers of protein-protein interaction.

Sprinzak E, Margalit H.

J Mol Biol. 2001 Aug 24;311(4):681-92.

PMID:
11518523
[PubMed - indexed for MEDLINE]
20.

In silico two-hybrid system for the selection of physically interacting protein pairs.

Pazos F, Valencia A.

Proteins. 2002 May 1;47(2):219-27.

PMID:
11933068
[PubMed - indexed for MEDLINE]

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