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Items: 1 to 20 of 101

1.
3.

Overcoming sequence misalignments with weighted structural superposition.

Khazanov NA, Damm-Ganamet KL, Quang DX, Carlson HA.

Proteins. 2012 Nov;80(11):2523-35. doi: 10.1002/prot.24134. Epub 2012 Jul 28.

4.

Comparative analysis of protein structure alignments.

Mayr G, Domingues FS, Lackner P.

BMC Struct Biol. 2007 Jul 26;7:50.

6.

Identification of homologous core structures.

Matsuo Y, Bryant SH.

Proteins. 1999 Apr 1;35(1):70-9.

PMID:
10090287
7.

Structure is three to ten times more conserved than sequence--a study of structural response in protein cores.

IllergÄrd K, Ardell DH, Elofsson A.

Proteins. 2009 Nov 15;77(3):499-508. doi: 10.1002/prot.22458.

PMID:
19507241
8.

UniAlign: protein structure alignment meets evolution.

Zhao C, Sacan A.

Bioinformatics. 2015 Oct 1;31(19):3139-46. doi: 10.1093/bioinformatics/btv354. Epub 2015 Jun 9.

PMID:
26059715
9.

PASS2: an automated database of protein alignments organised as structural superfamilies.

Bhaduri A, Pugalenthi G, Sowdhamini R.

BMC Bioinformatics. 2004 Apr 2;5:35.

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11.

Protein structural alignment for detection of maximally conserved regions.

Kotlovyi V, Nichols WL, Ten Eyck LF.

Biophys Chem. 2003 Sep;105(2-3):595-608.

PMID:
14499921
12.

Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.

Huang YM, Bystroff C.

Bioinformatics. 2006 Feb 15;22(4):413-22. Epub 2005 Dec 13.

14.

Protein structure similarity from Principle Component Correlation analysis.

Zhou X, Chou J, Wong ST.

BMC Bioinformatics. 2006 Jan 25;7:40.

16.

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins.

Landgraf R, Xenarios I, Eisenberg D.

J Mol Biol. 2001 Apr 13;307(5):1487-502.

PMID:
11292355
17.

Mining protein loops using a structural alphabet and statistical exceptionality.

Regad L, Martin J, Nuel G, Camproux AC.

BMC Bioinformatics. 2010 Feb 4;11:75. doi: 10.1186/1471-2105-11-75.

18.

A comprehensive system for evaluation of remote sequence similarity detection.

Qi Y, Sadreyev RI, Wang Y, Kim BH, Grishin NV.

BMC Bioinformatics. 2007 Aug 28;8:314.

19.

MultiSeq: unifying sequence and structure data for evolutionary analysis.

Roberts E, Eargle J, Wright D, Luthey-Schulten Z.

BMC Bioinformatics. 2006 Aug 16;7:382.

20.

Biological insights from topology independent comparison of protein 3D structures.

Nguyen MN, Madhusudhan MS.

Nucleic Acids Res. 2011 Aug;39(14):e94. doi: 10.1093/nar/gkr348. Epub 2011 May 19.

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