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Items: 1 to 20 of 110

1.

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates.

Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engström PG, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Pezeron G, Mourrain P, Ellingsen S, Oates AC, Thisse C, Thisse B, Foucher I, Adolf B, Geling A, Lenhard B, Becker TS.

Genome Res. 2007 May;17(5):545-55. Epub 2007 Mar 26.

2.

Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

Engström PG, Ho Sui SJ, Drivenes O, Becker TS, Lenhard B.

Genome Res. 2007 Dec;17(12):1898-908. Epub 2007 Nov 7.

4.

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints.

Irimia M, Tena JJ, Alexis MS, Fernandez-Miñan A, Maeso I, Bogdanovic O, de la Calle-Mustienes E, Roy SW, Gómez-Skarmeta JL, Fraser HB.

Genome Res. 2012 Dec;22(12):2356-67. doi: 10.1101/gr.139725.112. Epub 2012 Jun 21.

5.

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention.

Hufton AL, Mathia S, Braun H, Georgi U, Lehrach H, Vingron M, Poustka AJ, Panopoulou G.

Genome Res. 2009 Nov;19(11):2036-51. doi: 10.1101/gr.093237.109. Epub 2009 Aug 24.

6.

Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes.

Navratilova P, Fredman D, Hawkins TA, Turner K, Lenhard B, Becker TS.

Dev Biol. 2009 Mar 15;327(2):526-40. doi: 10.1016/j.ydbio.2008.10.044. Epub 2008 Nov 12.

7.
8.

Genomic features and computational identification of human microRNAs under long-range developmental regulation.

Sheng Y, Previti C.

BMC Genomics. 2011 May 27;12:270. doi: 10.1186/1471-2164-12-270.

9.

The random versus fragile breakage models of chromosome evolution: a matter of resolution.

Becker TS, Lenhard B.

Mol Genet Genomics. 2007 Nov;278(5):487-91. Epub 2007 Sep 13. Review.

PMID:
17851692
10.

Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family.

Gillis WQ, St John J, Bowerman B, Schneider SQ.

BMC Evol Biol. 2009 Aug 20;9:207. doi: 10.1186/1471-2148-9-207.

11.

Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout.

Moghadam HK, Ferguson MM, Danzmann RG.

BMC Genomics. 2009 Jun 23;10:278. doi: 10.1186/1471-2164-10-278.

12.

Transcriptional features of genomic regulatory blocks.

Akalin A, Fredman D, Arner E, Dong X, Bryne JC, Suzuki H, Daub CO, Hayashizaki Y, Lenhard B.

Genome Biol. 2009;10(4):R38. doi: 10.1186/gb-2009-10-4-r38. Epub 2009 Apr 19.

13.

Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons.

Dong X, Navratilova P, Fredman D, Drivenes Ø, Becker TS, Lenhard B.

Nucleic Acids Res. 2010 Mar;38(4):1071-85. doi: 10.1093/nar/gkp1124. Epub 2009 Dec 6.

14.
15.

Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes.

Dong X, Fredman D, Lenhard B.

Genome Biol. 2009;10(8):R86. doi: 10.1186/gb-2009-10-8-r86. Epub 2009 Aug 21.

16.

Origin and evolution of TRIM proteins: new insights from the complete TRIM repertoire of zebrafish and pufferfish.

Boudinot P, van der Aa LM, Jouneau L, Du Pasquier L, Pontarotti P, Briolat V, Benmansour A, Levraud JP.

PLoS One. 2011;6(7):e22022. doi: 10.1371/journal.pone.0022022. Epub 2011 Jul 15.

17.

The zebrafish gene map defines ancestral vertebrate chromosomes.

Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH, Talbot WS.

Genome Res. 2005 Sep;15(9):1307-14. Epub 2005 Aug 18.

18.

Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.

Kassahn KS, Dang VT, Wilkins SJ, Perkins AC, Ragan MA.

Genome Res. 2009 Aug;19(8):1404-18. doi: 10.1101/gr.086827.108. Epub 2009 May 13.

19.

Cis-regulation and chromosomal rearrangement of the fgf8 locus after the teleost/tetrapod split.

Komisarczuk AZ, Kawakami K, Becker TS.

Dev Biol. 2009 Dec 15;336(2):301-12. doi: 10.1016/j.ydbio.2009.09.029. Epub 2009 Sep 25.

20.

The syntenic relationship of the zebrafish and human genomes.

Barbazuk WB, Korf I, Kadavi C, Heyen J, Tate S, Wun E, Bedell JA, McPherson JD, Johnson SL.

Genome Res. 2000 Sep;10(9):1351-8.

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