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Results: 1 to 20 of 59

Similar articles for PubMed (Select 17374142)

1.
2.

Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.

Vinson JP, Jaffe DB, O'Neill K, Karlsson EK, Stange-Thomann N, Anderson S, Mesirov JP, Satoh N, Satou Y, Nusbaum C, Birren B, Galagan JE, Lander ES.

Genome Res. 2005 Aug;15(8):1127-35.

3.

Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi.

Kim JH, Waterman MS, Li LM.

Genome Res. 2007 Jul;17(7):1101-10. Epub 2007 Jun 13.

4.

Polymorphism due to multiple amino acid substitutions at a codon site within Ciona savignyi.

Donmez N, Bazykin GA, Brudno M, Kondrashov AS.

Genetics. 2009 Feb;181(2):685-90. doi: 10.1534/genetics.108.097535. Epub 2008 Dec 15.

5.

Extreme genomic variation in a natural population.

Small KS, Brudno M, Hill MM, Sidow A.

Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5698-703. Epub 2007 Mar 19.

6.

A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.

Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, Lee D, Mathewson CA, Olson T, O'connor K, Prabhu AL, Smailus DE, Stott JM, Tsai M, Wye NH, Yang GS, Zhuang J, Holt RA, Putnam NH, Vrebalov J, Giovannoni JJ, Grimwood J, Schmutz J, Rokhsar D, Jones SJ, Marra MA, Tuskan GA, Bohlmann J, Ellis BE, Ritland K, Douglas CJ, Schein JE.

Plant J. 2007 Jun;50(6):1063-78. Epub 2007 May 3.

PMID:
17488239
7.

The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution.

Hill MM, Broman KW, Stupka E, Smith WC, Jiang D, Sidow A.

Genome Res. 2008 Aug;18(8):1369-79. doi: 10.1101/gr.078576.108. Epub 2008 Jun 2.

8.

Polymorphism and divergence within the ascidian genus Ciona.

Nydam ML, Harrison RG.

Mol Phylogenet Evol. 2010 Aug;56(2):718-26. doi: 10.1016/j.ympev.2010.03.042. Epub 2010 Apr 18.

PMID:
20403444
9.

HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies.

Huang S, Chen Z, Huang G, Yu T, Yang P, Li J, Fu Y, Yuan S, Chen S, Xu A.

Genome Res. 2012 Aug;22(8):1581-8. doi: 10.1101/gr.133652.111. Epub 2012 May 3.

10.

Mining for single nucleotide polymorphisms in pig genome sequence data.

Kerstens HH, Kollers S, Kommadath A, Del Rosario M, Dibbits B, Kinders SM, Crooijmans RP, Groenen MA.

BMC Genomics. 2009 Jan 6;10:4. doi: 10.1186/1471-2164-10-4.

11.

Minos transposon causes germline transgenesis of the ascidian Ciona savignyi.

Matsuoka T, Awazu S, Satoh N, Sasakura Y.

Dev Growth Differ. 2004 Jun;46(3):249-55.

PMID:
15206956
12.

Inverse correlation of population similarity and introduction date for invasive ascidians.

Silva N, Smith WC.

PLoS One. 2008 Jun 25;3(6):e2552. doi: 10.1371/journal.pone.0002552.

13.

A dataset generator for whole genome shotgun sequencing.

Myers G.

Proc Int Conf Intell Syst Mol Biol. 1999:202-10.

PMID:
10786303
14.

Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes.

Dohm JC, Lange C, Reinhardt R, Himmelbauer H.

Plant J. 2009 Jan;57(1):14-26. doi: 10.1111/j.1365-313X.2008.03665.x. Epub 2008 Aug 29.

PMID:
18764921
15.

Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid triticeae gene pools.

Wicker T, Krattinger SG, Lagudah ES, Komatsuda T, Pourkheirandish M, Matsumoto T, Cloutier S, Reiser L, Kanamori H, Sato K, Perovic D, Stein N, Keller B.

Plant Physiol. 2009 Jan;149(1):258-70. doi: 10.1104/pp.108.129734. Epub 2008 Nov 14.

16.

Tracembler--software for in-silico chromosome walking in unassembled genomes.

Dong Q, Wilkerson MD, Brendel V.

BMC Bioinformatics. 2007 May 9;8:151.

17.

Identification and characterization of sea squirt telomerase reverse transcriptase.

Li Y, Yates JA, Chen JJ.

Gene. 2007 Oct 1;400(1-2):16-24. Epub 2007 Jun 5.

PMID:
17601686
18.

ABySS: a parallel assembler for short read sequence data.

Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I.

Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.

19.

Preparation of a phage DNA fragment library for whole genome shotgun sequencing.

Summer EJ.

Methods Mol Biol. 2009;502:27-46. doi: 10.1007/978-1-60327-565-1_4.

PMID:
19082550
20.

A novel tumor necrosis factor ligand superfamily member (CsTL) from Ciona savignyi: molecular identification and expression analysis.

Zhang X, Luan W, Jin S, Xiang J.

Dev Comp Immunol. 2008;32(11):1362-73. doi: 10.1016/j.dci.2008.05.009. Epub 2008 Jun 9.

PMID:
18579203
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