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Results: 1 to 20 of 111

1.

Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome.

Shedlock AM, Botka CW, Zhao S, Shetty J, Zhang T, Liu JS, Deschavanne PJ, Edwards SV.

Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2767-72. Epub 2007 Feb 16.

PMID:
17307883
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Phylogenomic investigation of CR1 LINE diversity in reptiles.

Shedlock AM.

Syst Biol. 2006 Dec;55(6):902-11.

PMID:
17345672
[PubMed - indexed for MEDLINE]
3.

Genome evolution in Reptilia, the sister group of mammals.

Janes DE, Organ CL, Fujita MK, Shedlock AM, Edwards SV.

Annu Rev Genomics Hum Genet. 2010;11:239-64. doi: 10.1146/annurev-genom-082509-141646. Review.

PMID:
20590429
[PubMed - indexed for MEDLINE]
4.

Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor.

Janes DE, Chapus C, Gondo Y, Clayton DF, Sinha S, Blatti CA, Organ CL, Fujita MK, Balakrishnan CN, Edwards SV.

Genome Biol Evol. 2011;3:102-13. doi: 10.1093/gbe/evq087. Epub 2010 Dec 23.

PMID:
21183607
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The genome of the green anole lizard and a comparative analysis with birds and mammals.

Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, Colbourne JK, Fujita MK, Moreno RG, ten Hallers BF, Haussler D, Heger A, Heiman D, Janes DE, Johnson J, de Jong PJ, Koriabine MY, Lara M, Novick PA, Organ CL, Peach SE, Poe S, Pollock DD, de Queiroz K, Sanger T, Searle S, Smith JD, Smith Z, Swofford R, Turner-Maier J, Wade J, Young S, Zadissa A, Edwards SV, Glenn TC, Schneider CJ, Losos JB, Lander ES, Breen M, Ponting CP, Lindblad-Toh K.

Nature. 2011 Aug 31;477(7366):587-91. doi: 10.1038/nature10390.

PMID:
21881562
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

[A family of short retroposons (Squaml) from squamate reptiles (Reptilia: Squamata): structure, evolution and correlation with phylogeny].

Kosushkin SA, Borodulina OR, Solov'eva EN, Grechko VV.

Mol Biol (Mosk). 2008 Nov-Dec;42(6):977-89. Russian.

PMID:
19140317
[PubMed - indexed for MEDLINE]
7.

Genome size and metabolic intensity in tetrapods: a tale of two lines.

Vinogradov AE, Anatskaya OV.

Proc Biol Sci. 2006 Jan 7;273(1582):27-32.

PMID:
16519230
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome evolution in Reptilia: in silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird.

Chapus C, Edwards SV.

BMC Genomics. 2009 Jul 14;10 Suppl 2:S8. doi: 10.1186/1471-2164-10-S2-S8.

PMID:
19607659
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Amniote phylogenomics: testing evolutionary hypotheses with BAC library scanning and targeted clone analysis of large-scale DNA sequences from reptiles.

Shedlock AM, Janes DE, Edwards SV.

Methods Mol Biol. 2008;422:91-117. doi: 10.1007/978-1-59745-581-7_7.

PMID:
18629663
[PubMed - indexed for MEDLINE]
11.

Complete mitochondrial genome suggests diapsid affinities of turtles.

Zardoya R, Meyer A.

Proc Natl Acad Sci U S A. 1998 Nov 24;95(24):14226-31.

PMID:
9826682
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The Anolis lizard genome: an amniote genome without isochores.

Fujita MK, Edwards SV, Ponting CP.

Genome Biol Evol. 2011;3:974-84. doi: 10.1093/gbe/evr072. Epub 2011 Jul 27.

PMID:
21795750
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transposable elements in reptilian and avian (sauropsida) genomes.

Kordis D.

Cytogenet Genome Res. 2009;127(2-4):94-111. doi: 10.1159/000294999. Epub 2010 Mar 6. Review.

PMID:
20215725
[PubMed - indexed for MEDLINE]
14.

Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes.

Mindell DP, Sorenson MD, Dimcheff DE, Hasegawa M, Ast JC, Yuri T.

Syst Biol. 1999 Mar;48(1):138-52.

PMID:
12078637
[PubMed - indexed for MEDLINE]
15.

A universal method for the study of CR1 retroposons in nonmodel bird genomes.

Suh A, Kriegs JO, Donnellan S, Brosius J, Schmitz J.

Mol Biol Evol. 2012 Oct;29(10):2899-903. Epub 2012 Apr 20.

PMID:
22522308
[PubMed - indexed for MEDLINE]
Free Article
16.

Cytogenetic repartition of chicken CR1 sequences evidenced by PRINS in Galliformes and some other birds.

Coullin P, Bed'Hom B, Candelier JJ, Vettese D, Maucolin S, Moulin S, Galkina SA, Bernheim A, Volobouev V.

Chromosome Res. 2005;13(7):665-73. Epub 2005 Oct 24.

PMID:
16235116
[PubMed - indexed for MEDLINE]
17.

Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers.

Kumazawa Y, Nishida M.

Mol Biol Evol. 1995 Sep;12(5):759-72.

PMID:
7476123
[PubMed - indexed for MEDLINE]
18.

Molecular decay of enamel matrix protein genes in turtles and other edentulous amniotes.

Meredith RW, Gatesy J, Springer MS.

BMC Evol Biol. 2013 Jan 23;13:20. doi: 10.1186/1471-2148-13-20.

PMID:
23342979
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Evolution of chicken repeat 1 (CR1) elements: evidence for ancient subfamilies and multiple progenitors.

Vandergon TL, Reitman M.

Mol Biol Evol. 1994 Nov;11(6):886-98.

PMID:
7815928
[PubMed - indexed for MEDLINE]
20.

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis.

McCormack JE, Faircloth BC, Crawford NG, Gowaty PA, Brumfield RT, Glenn TC.

Genome Res. 2012 Apr;22(4):746-54. doi: 10.1101/gr.125864.111. Epub 2011 Dec 29.

PMID:
22207614
[PubMed - indexed for MEDLINE]
Free PMC Article

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