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Results: 1 to 20 of 246

1.

Global reconstruction of the human metabolic network based on genomic and bibliomic data.

Duarte NC, Becker SA, Jamshidi N, Thiele I, Mo ML, Vo TD, Srivas R, Palsson BØ.

Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1777-82. Epub 2007 Jan 31.

PMID:
17267599
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The Edinburgh human metabolic network reconstruction and its functional analysis.

Ma H, Sorokin A, Mazein A, Selkov A, Selkov E, Demin O, Goryanin I.

Mol Syst Biol. 2007;3:135. Epub 2007 Sep 18.

PMID:
17882155
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A genome-scale, constraint-based approach to systems biology of human metabolism.

Mo ML, Jamshidi N, Palsson BØ.

Mol Biosyst. 2007 Sep;3(9):598-603. Epub 2007 Jul 11.

PMID:
17700859
[PubMed - indexed for MEDLINE]
4.

Integrating high-throughput and computational data elucidates bacterial networks.

Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO.

Nature. 2004 May 6;429(6987):92-6.

PMID:
15129285
[PubMed - indexed for MEDLINE]
5.

Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data.

Oh YK, Palsson BO, Park SM, Schilling CH, Mahadevan R.

J Biol Chem. 2007 Sep 28;282(39):28791-9. Epub 2007 Jun 15.

PMID:
17573341
[PubMed - indexed for MEDLINE]
Free Article
6.

Understanding human metabolic physiology: a genome-to-systems approach.

Mo ML, Palsson BØ.

Trends Biotechnol. 2009 Jan;27(1):37-44. doi: 10.1016/j.tibtech.2008.09.007. Epub 2008 Nov 17. Review.

PMID:
19010556
[PubMed - indexed for MEDLINE]
7.

Using the reconstructed genome-scale human metabolic network to study physiology and pathology.

Bordbar A, Palsson BO.

J Intern Med. 2012 Feb;271(2):131-41. doi: 10.1111/j.1365-2796.2011.02494.x. Review.

PMID:
22142339
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Formulating genome-scale kinetic models in the post-genome era.

Jamshidi N, Palsson BØ.

Mol Syst Biol. 2008;4:171. doi: 10.1038/msb.2008.8. Epub 2008 Mar 4.

PMID:
18319723
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome-scale network analysis of imprinted human metabolic genes.

Sigurdsson MI, Jamshidi N, Jonsson JJ, Palsson BO.

Epigenetics. 2009 Jan;4(1):43-6. Epub 2009 Jan 31. Review.

PMID:
19218833
[PubMed - indexed for MEDLINE]
Free Article
10.

Systems medicine and metabolic modelling.

Mardinoglu A, Nielsen J.

J Intern Med. 2012 Feb;271(2):142-54. doi: 10.1111/j.1365-2796.2011.02493.x. Review.

PMID:
22142312
[PubMed - indexed for MEDLINE]
11.

Systematic assignment of thermodynamic constraints in metabolic network models.

Kümmel A, Panke S, Heinemann M.

BMC Bioinformatics. 2006 Nov 23;7:512.

PMID:
17123434
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Exploiting the pathway structure of metabolism to reveal high-order epistasis.

Imielinski M, Belta C.

BMC Syst Biol. 2008 Apr 30;2:40. doi: 10.1186/1752-0509-2-40.

PMID:
18447928
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-scale modeling and in silico analysis of mouse cell metabolic network.

Selvarasu S, Karimi IA, Ghim GH, Lee DY.

Mol Biosyst. 2010 Jan;6(1):152-61. doi: 10.1039/b912865d. Epub 2009 Sep 2.

PMID:
20024077
[PubMed - indexed for MEDLINE]
14.

From genomes to in silico cells via metabolic networks.

Borodina I, Nielsen J.

Curr Opin Biotechnol. 2005 Jun;16(3):350-5. Review.

PMID:
15961036
[PubMed - indexed for MEDLINE]
15.

Constraints-based genome-scale metabolic simulation for systems metabolic engineering.

Park JM, Kim TY, Lee SY.

Biotechnol Adv. 2009 Nov-Dec;27(6):979-88. doi: 10.1016/j.biotechadv.2009.05.019. Epub 2009 May 20. Review.

PMID:
19464354
[PubMed - indexed for MEDLINE]
16.

Reconstructing the metabolic network of a bacterium from its genome.

Francke C, Siezen RJ, Teusink B.

Trends Microbiol. 2005 Nov;13(11):550-8. Epub 2005 Sep 19. Review.

PMID:
16169729
[PubMed - indexed for MEDLINE]
17.

Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1.

Oberhardt MA, Puchałka J, Fryer KE, Martins dos Santos VA, Papin JA.

J Bacteriol. 2008 Apr;190(8):2790-803. doi: 10.1128/JB.01583-07. Epub 2008 Jan 11.

PMID:
18192387
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Reconstruction and analysis of human liver-specific metabolic network based on CNHLPP data.

Zhao J, Geng C, Tao L, Zhang D, Jiang Y, Tang K, Zhu R, Yu H, Zhang W, He F, Li Y, Cao Z.

J Proteome Res. 2010 Apr 5;9(4):1648-58. doi: 10.1021/pr9006188.

PMID:
20136149
[PubMed - indexed for MEDLINE]
20.

Network-based prediction of human tissue-specific metabolism.

Shlomi T, Cabili MN, Herrgård MJ, Palsson BØ, Ruppin E.

Nat Biotechnol. 2008 Sep;26(9):1003-10. doi: 10.1038/nbt.1487.

PMID:
18711341
[PubMed - indexed for MEDLINE]

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