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Results: 1 to 20 of 124

1.

Analysis of gene networks for drug target discovery and validation.

Imoto S, Tamada Y, Savoie CJ, Miyano S.

Methods Mol Biol. 2007;360:33-56.

PMID:
17172724
[PubMed - indexed for MEDLINE]
2.

Use of gene networks for identifying and validating drug targets.

Imoto S, Savoie CJ, Aburatani S, Kim S, Tashiro K, Kuhara S, Miyano S.

J Bioinform Comput Biol. 2003 Oct;1(3):459-74.

PMID:
15290765
[PubMed - indexed for MEDLINE]
3.

Identifying drug active pathways from gene networks estimated by gene expression data.

Tamada Y, Imoto S, Tashiro K, Kuhara S, Miyano S.

Genome Inform. 2005;16(1):182-91.

PMID:
16362921
[PubMed - indexed for MEDLINE]
4.

Use of gene networks from full genome microarray libraries to identify functionally relevant drug-affected genes and gene regulation cascades.

Savoie CJ, Aburatani S, Watanabe S, Eguchi Y, Muta S, Imoto S, Miyano S, Kuhara S, Tashiro K.

DNA Res. 2003 Feb 28;10(1):19-25. Erratum in: DNA Res. 2003 Apr 30;10(2):following pg. 84.

PMID:
12693551
[PubMed - indexed for MEDLINE]
Free Article
5.

Inferring gene networks from time series microarray data using dynamic Bayesian networks.

Kim SY, Imoto S, Miyano S.

Brief Bioinform. 2003 Sep;4(3):228-35.

PMID:
14582517
[PubMed - indexed for MEDLINE]
Free Article
6.

Correlated Discretized Expression score: a method for identifying gene interaction networks from time course microarray expression data.

Larsen P, Almasri E, Chen G, Dai Y.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:5842-5.

PMID:
17946340
[PubMed - indexed for MEDLINE]
7.

A hybrid Bayesian network learning method for constructing gene networks.

Wang M, Chen Z, Cloutier S.

Comput Biol Chem. 2007 Oct;31(5-6):361-72. Epub 2007 Aug 19.

PMID:
17889617
[PubMed - indexed for MEDLINE]
8.

Combining microarrays and biological knowledge for estimating gene networks via bayesian networks.

Imoto S, Higuchi T, Goto T, Tashiro K, Kuhara S, Miyano S.

J Bioinform Comput Biol. 2004 Mar;2(1):77-98.

PMID:
15272434
[PubMed - indexed for MEDLINE]
9.

Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data.

Kim S, Imoto S, Miyano S.

Biosystems. 2004 Jul;75(1-3):57-65.

PMID:
15245804
[PubMed - indexed for MEDLINE]
10.

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.

PMID:
18447957
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

[Drug discovery based on microarray].

Kuhara S, Tashiro K, Muta S.

Nihon Yakurigaku Zasshi. 2002 Nov;120(1):47P-50P. Review. Japanese.

PMID:
12491777
[PubMed - indexed for MEDLINE]
12.

Inference of gene regulatory networks by means of dynamic differential Bayesian networks and nonparametric regression.

Sugimoto N, Iba H.

Genome Inform. 2004;15(2):121-30.

PMID:
15706498
[PubMed - indexed for MEDLINE]
13.

Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network.

Imoto S, Kim S, Goto T, Miyano S, Aburatani S, Tashiro K, Kuhara S.

J Bioinform Comput Biol. 2003 Jul;1(2):231-52.

PMID:
15290771
[PubMed - indexed for MEDLINE]
14.

Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

Shimamura T, Imoto S, Yamaguchi R, Miyano S.

Genome Inform. 2007;19:142-53.

PMID:
18546512
[PubMed - indexed for MEDLINE]
15.

A statistical method for constructing transcriptional regulatory networks using gene expression and sequence data.

Xing B, van der Laan MJ.

J Comput Biol. 2005 Mar;12(2):229-46.

PMID:
15767778
[PubMed - indexed for MEDLINE]
16.

Sample scale-free gene regulatory network using gene ontology.

Chen G, Larsen P, Almasri E, Dai Y.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:5523-6.

PMID:
17946312
[PubMed - indexed for MEDLINE]
17.

Genome-wide expression profiling of the response to polyene, pyrimidine, azole, and echinocandin antifungal agents in Saccharomyces cerevisiae.

Agarwal AK, Rogers PD, Baerson SR, Jacob MR, Barker KS, Cleary JD, Walker LA, Nagle DG, Clark AM.

J Biol Chem. 2003 Sep 12;278(37):34998-5015. Epub 2003 Jun 24.

PMID:
12824174
[PubMed - indexed for MEDLINE]
Free Article
18.

Chemical-genetic approaches for exploring the mode of action of natural products.

Lopez A, Parsons AB, Nislow C, Giaever G, Boone C.

Prog Drug Res. 2008;66:237, 239-71. Review.

PMID:
18416308
[PubMed - indexed for MEDLINE]
19.

Gene networks reconstruction and time-series prediction from microarray data using recurrent neural fuzzy networks.

Maraziotis IA, Dragomir A, Bezerianos A.

IET Syst Biol. 2007 Jan;1(1):41-50.

PMID:
17370428
[PubMed - indexed for MEDLINE]
20.

Utilizing evolutionary information and gene expression data for estimating gene networks with bayesian network models.

Tamada Y, Bannai H, Imoto S, Katayama T, Kanehisa M, Miyano S.

J Bioinform Comput Biol. 2005 Dec;3(6):1295-313.

PMID:
16374908
[PubMed - indexed for MEDLINE]

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