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Results: 1 to 20 of 244

1.

Dynamic exploration and editing of KEGG pathway diagrams.

Klukas C, Schreiber F.

Bioinformatics. 2007 Feb 1;23(3):344-50. Epub 2006 Dec 1.

PMID:
17142815
[PubMed - indexed for MEDLINE]
Free Article
2.

Using the KEGG database resource.

Aoki KF, Kanehisa M.

Curr Protoc Bioinformatics. 2005 Oct;Chapter 1:Unit 1.12. doi: 10.1002/0471250953.bi0112s11.

PMID:
18428742
[PubMed - indexed for MEDLINE]
3.

VitaPad: visualization tools for the analysis of pathway data.

Holford M, Li N, Nadkarni P, Zhao H.

Bioinformatics. 2005 Apr 15;21(8):1596-602. Epub 2004 Nov 25.

PMID:
15564306
[PubMed - indexed for MEDLINE]
Free Article
4.

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor.

Zhang JD, Wiemann S.

Bioinformatics. 2009 Jun 1;25(11):1470-1. doi: 10.1093/bioinformatics/btp167. Epub 2009 Mar 23.

PMID:
19307239
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

An editor for pathway drawing and data visualization in the Biopathways Workbench.

Byrnes RW, Cotter D, Maer A, Li J, Nadeau D, Subramaniam S.

BMC Syst Biol. 2009 Oct 2;3:99. doi: 10.1186/1752-0509-3-99.

PMID:
19799790
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization.

Dogrusoz U, Erson EZ, Giral E, Demir E, Babur O, Cetintas A, Colak R.

Bioinformatics. 2006 Feb 1;22(3):374-5. Epub 2005 Nov 15.

PMID:
16287939
[PubMed - indexed for MEDLINE]
Free Article
7.

Using Apollo to browse and edit genome annotations.

Misra S, Harris N.

Curr Protoc Bioinformatics. 2006 Jan;Chapter 9:Unit 9.5. doi: 10.1002/0471250953.bi0905s12.

PMID:
18428771
[PubMed - indexed for MEDLINE]
8.

DRAGON and DRAGON view: information annotation and visualization tools for large-scale expression data.

Bouton CM, Pevsner J.

Curr Protoc Bioinformatics. 2003 Aug;Chapter 7:Unit 7.4. doi: 10.1002/0471250953.bi0704s02.

PMID:
18428707
[PubMed - indexed for MEDLINE]
9.

MuGeN: simultaneous exploration of multiple genomes and computer analysis results.

Hoebeke M, Nicolas P, Bessières P.

Bioinformatics. 2003 May 1;19(7):859-64.

PMID:
12724296
[PubMed - indexed for MEDLINE]
Free Article
10.

PaVESy: Pathway Visualization and Editing System.

Lüdemann A, Weicht D, Selbig J, Kopka J.

Bioinformatics. 2004 Nov 1;20(16):2841-4. Epub 2004 Apr 22.

PMID:
15105280
[PubMed - indexed for MEDLINE]
Free Article
11.

PathAligner: metabolic pathway retrieval and alignment.

Chen M, Hofestädt R.

Appl Bioinformatics. 2004;3(4):241-52.

PMID:
15702955
[PubMed - indexed for MEDLINE]
12.

Provenance and annotation for visual exploration systems.

Groth DP, Streefkerk K.

IEEE Trans Vis Comput Graph. 2006 Nov-Dec;12(6):1500-10.

PMID:
17073372
[PubMed - indexed for MEDLINE]
13.

Integrating whole-genome expression results into metabolic networks with Pathway Processor.

Cavalieri D, Grosu P.

Curr Protoc Bioinformatics. 2004 May;Chapter 7:Unit 7.6. doi: 10.1002/0471250953.bi0706s05.

PMID:
18428732
[PubMed - indexed for MEDLINE]
14.

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.

Haft DH, Selengut JD, Brinkac LM, Zafar N, White O.

Bioinformatics. 2005 Feb 1;21(3):293-306. Epub 2004 Sep 3.

PMID:
15347579
[PubMed - indexed for MEDLINE]
Free Article
15.

MedicCyc: a biochemical pathway database for Medicago truncatula.

Urbanczyk-Wochniak E, Sumner LW.

Bioinformatics. 2007 Jun 1;23(11):1418-23. Epub 2007 Mar 7.

PMID:
17344243
[PubMed - indexed for MEDLINE]
Free Article
16.

Challenges to be faced in the reconstruction of metabolic networks from public databases.

Poolman MG, Bonde BK, Gevorgyan A, Patel HH, Fell DA.

Syst Biol (Stevenage). 2006 Sep;153(5):379-84.

PMID:
16986322
[PubMed - indexed for MEDLINE]
17.

The importance of biological databases in biological discovery.

Baxevanis AD.

Curr Protoc Bioinformatics. 2006 Mar;Chapter 1:Unit 1.1. doi: 10.1002/0471250953.bi0101s13. Review.

PMID:
18428753
[PubMed - indexed for MEDLINE]
18.

KAAS: an automatic genome annotation and pathway reconstruction server.

Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. Epub 2007 May 25.

PMID:
17526522
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180. doi: 10.1186/1471-2105-9-180.

PMID:
18400082
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Analyzing networks with VisANT.

Hu Z, Mellor J, DeLisi C.

Curr Protoc Bioinformatics. 2004 Dec;Chapter 8:Unit 8.8. doi: 10.1002/0471250953.bi0808s08.

PMID:
18428738
[PubMed - indexed for MEDLINE]

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