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Similar articles for PubMed (Select 17099229)

1.

Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation.

Karro JE, Yan Y, Zheng D, Zhang Z, Carriero N, Cayting P, Harrrison P, Gerstein M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D55-60. Epub 2006 Nov 11.

2.

VEGA, the genome browser with a difference.

Loveland J.

Brief Bioinform. 2005 Jun;6(2):189-93. Review.

3.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

4.

Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research.

Stover NA, Krieger CJ, Binkley G, Dong Q, Fisk DG, Nash R, Sethuraman A, Weng S, Cherry JM.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D500-3.

5.

Pseudofam: the pseudogene families database.

Lam HY, Khurana E, Fang G, Cayting P, Carriero N, Cheung KH, Gerstein MB.

Nucleic Acids Res. 2009 Jan;37(Database issue):D738-43. doi: 10.1093/nar/gkn758. Epub 2008 Oct 28.

6.

PseudoGeneQuest - service for identification of different pseudogene types in the human genome.

Ortutay C, Vihinen M.

BMC Bioinformatics. 2008 Jul 2;9:299. doi: 10.1186/1471-2105-9-299.

7.

Accessing the SEED genome databases via Web services API: tools for programmers.

Disz T, Akhter S, Cuevas D, Olson R, Overbeek R, Vonstein V, Stevens R, Edwards RA.

BMC Bioinformatics. 2010 Jun 14;11:319. doi: 10.1186/1471-2105-11-319.

8.
9.

Iterative gene prediction and pseudogene removal improves genome annotation.

van Baren MJ, Brent MR.

Genome Res. 2006 May;16(5):678-85.

10.

The genopolis microarray database.

Splendiani A, Brandizi M, Even G, Beretta O, Pavelka N, Pelizzola M, Mayhaus M, Foti M, Mauri G, Ricciardi-Castagnoli P.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S21.

11.

dictyBase, the model organism database for Dictyostelium discoideum.

Chisholm RL, Gaudet P, Just EM, Pilcher KE, Fey P, Merchant SN, Kibbe WA.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D423-7.

12.

Legume Resources: MtDB and Medicago.Org.

Retzel EF, Johnson JE, Crow JA, Lamblin AF, Paule CE.

Methods Mol Biol. 2007;406:261-74.

PMID:
18287697
13.

Tranche distributed repository and ProteomeCommons.org.

Smith BE, Hill JA, Gjukich MA, Andrews PC.

Methods Mol Biol. 2011;696:123-45. doi: 10.1007/978-1-60761-987-1_8.

PMID:
21063945
14.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

15.

Biowep: a workflow enactment portal for bioinformatics applications.

Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S19.

16.
17.

DroSpeGe: rapid access database for new Drosophila species genomes.

Gilbert DG.

Nucleic Acids Res. 2007 Jan;35(Database issue):D480-5.

18.

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.

19.

Using the Ensembl genome server to browse genomic sequence data.

Fernández-Suárez XM, Schuster MK.

Curr Protoc Bioinformatics. 2007 Jan;Chapter 1:Unit 1.15. doi: 10.1002/0471250953.bi0115s16.

PMID:
18428779
20.

SMART 6: recent updates and new developments.

Letunic I, Doerks T, Bork P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D229-32. doi: 10.1093/nar/gkn808. Epub 2008 Oct 31.

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