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Results: 1 to 20 of 172

Similar articles for PubMed (Select 17038343)

1.

THOR: targeted high-throughput ortholog reconstructor.

Bainbridge MN, Warren RL, He A, Bilenky M, Robertson AG, Jones SJ.

Bioinformatics. 2007 Oct 1;23(19):2622-4. Epub 2006 Oct 11.

2.

Improving the specificity of high-throughput ortholog prediction.

Fulton DL, Li YY, Laird MR, Horsman BG, Roche FM, Brinkman FS.

BMC Bioinformatics. 2006 May 28;7:270.

3.

OrthoFocus: program for identification of orthologs in multiple genomes in family-focused studies.

Ivliev AE, Sergeeva MG.

J Bioinform Comput Biol. 2008 Aug;6(4):811-24.

PMID:
18763744
4.

Clustering of main orthologs for multiple genomes.

Fu Z, Jiang T.

Comput Syst Bioinformatics Conf. 2007;6:195-201.

5.

VisGenome: visualization of single and comparative genome representations.

Jakubowska J, Hunt E, Chalmers M, McBride M, Dominiczak AF.

Bioinformatics. 2007 Oct 1;23(19):2641-2.

6.

MaGIC: a program to generate targeted marker sets for genome-wide association studies.

Simpson CL, Hansen VK, Sham PC, Collins A, Powell JF, Al-Chalabi A.

Biotechniques. 2004 Dec;37(6):996-9.

PMID:
15597550
7.

WindowMasker: window-based masker for sequenced genomes.

Morgulis A, Gertz EM, Schäffer AA, Agarwala R.

Bioinformatics. 2006 Jan 15;22(2):134-41. Epub 2005 Nov 15.

8.

Clustering of main orthologs for multiple genomes.

Fu Z, Jiang T.

J Bioinform Comput Biol. 2008 Jun;6(3):573-84.

PMID:
18574863
9.

Introduction to comparing large sequence sets.

Page RD.

Curr Protoc Bioinformatics. 2003 Feb;Chapter 10:Unit 10.1. doi: 10.1002/0471250953.bi1001s00.

PMID:
18428691
10.

Detecting horizontal gene transfer with T-REX and RHOM programs.

Li Z, Wang L, Zhong Y.

Brief Bioinform. 2005 Dec;6(4):394-401.

11.

A fast and sensitive algorithm for aligning ESTs to the human genome.

Ogasawara J, Morishita S.

J Bioinform Comput Biol. 2003 Jul;1(2):363-86.

PMID:
15303288
12.

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.

Castrignanò T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G.

Bioinformatics. 2006 Feb 15;22(4):497-9. Epub 2005 Nov 2.

13.

Comparative genome assembly.

Pop M, Phillippy A, Delcher AL, Salzberg SL.

Brief Bioinform. 2004 Sep;5(3):237-48.

14.

Application of FirstEF to find promoters and first exons in the human genome.

Davuluri RV.

Curr Protoc Bioinformatics. 2003 May;Chapter 4:Unit4.7. doi: 10.1002/0471250953.bi0407s01.

PMID:
18428702
15.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

16.

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons.

Ellinghaus D, Kurtz S, Willhoeft U.

BMC Bioinformatics. 2008 Jan 14;9:18. doi: 10.1186/1471-2105-9-18.

17.

ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.

Abeel T, Saeys Y, Rouzé P, Van de Peer Y.

Bioinformatics. 2008 Jul 1;24(13):i24-31. doi: 10.1093/bioinformatics/btn172.

18.

Efficient algorithms and software for detection of full-length LTR retrotransposons.

Kalyanaraman A, Aluru S.

Proc IEEE Comput Syst Bioinform Conf. 2005:56-64.

PMID:
16447962
19.

The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.

Droege M, Hill B.

J Biotechnol. 2008 Aug 31;136(1-2):3-10. doi: 10.1016/j.jbiotec.2008.03.021. Epub 2008 Jun 21. Review.

PMID:
18616967
20.

HomologMiner: looking for homologous genomic groups in whole genomes.

Hou M, Berman P, Hsu CH, Harris RS.

Bioinformatics. 2007 Apr 15;23(8):917-25. Epub 2007 Feb 18.

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