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Results: 1 to 20 of 89

1.

DeepSAGE--digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples.

Nielsen KL, Høgh AL, Emmersen J.

Nucleic Acids Res. 2006;34(19):e133. Epub 2006 Oct 5.

PMID:
17028099
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

DeepSAGE: higher sensitivity and multiplexing of samples using a simpler experimental protocol.

Nielsen KL.

Methods Mol Biol. 2008;387:81-94.

PMID:
18287624
[PubMed - indexed for MEDLINE]
3.

SAGE and LongSAGE.

Høgh AL, Nielsen KL.

Methods Mol Biol. 2008;387:3-24.

PMID:
18287619
[PubMed - indexed for MEDLINE]
4.

Digital gene expression by tag sequencing on the illumina genome analyzer.

Morrissy S, Zhao Y, Delaney A, Asano J, Dhalla N, Li I, McDonald H, Pandoh P, Prabhu AL, Tam A, Hirst M, Marra M.

Curr Protoc Hum Genet. 2010 Apr;Chapter 11:Unit 11.11.1-36. doi: 10.1002/0471142905.hg1111s65.

PMID:
20373513
[PubMed - indexed for MEDLINE]
5.

Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves.

Urbanczyk-Wochniak E, Baxter C, Kolbe A, Kopka J, Sweetlove LJ, Fernie AR.

Planta. 2005 Aug;221(6):891-903. Epub 2005 Mar 3.

PMID:
15744496
[PubMed - indexed for MEDLINE]
6.

Genotype-dependent expression of specific members of potato protease inhibitor gene families in different tissues and in response to wounding and nematode infection.

Turrà D, Bellin D, Lorito M, Gebhardt C.

J Plant Physiol. 2009 May 1;166(7):762-74. doi: 10.1016/j.jplph.2008.10.005. Epub 2008 Dec 17.

PMID:
19095329
[PubMed - indexed for MEDLINE]
7.

Potato, Solanum tuberosum, defense against Colorado potato beetle, Leptinotarsa decemlineata (Say): microarray gene expression profiling of potato by Colorado potato beetle regurgitant treatment of wounded leaves.

Lawrence SD, Novak NG, Ju CJ, Cooke JE.

J Chem Ecol. 2008 Aug;34(8):1013-25. doi: 10.1007/s10886-008-9507-2. Epub 2008 Jun 27.

PMID:
18581175
[PubMed - indexed for MEDLINE]
8.

A comparative analysis of the information content in long and short SAGE libraries.

Li YJ, Xu P, Qin X, Schmechel DE, Hulette CM, Haines JL, Pericak-Vance MA, Gilbert JR.

BMC Bioinformatics. 2006 Nov 16;7:504.

PMID:
17109755
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Next-generation tag sequencing for cancer gene expression profiling.

Morrissy AS, Morin RD, Delaney A, Zeng T, McDonald H, Jones S, Zhao Y, Hirst M, Marra MA.

Genome Res. 2009 Oct;19(10):1825-35. doi: 10.1101/gr.094482.109. Epub 2009 Jun 18.

PMID:
19541910
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transcriptome annotation using tandem SAGE tags.

Rivals E, Boureux A, Lejeune M, Ottones F, Pérez OP, Tarhio J, Pierrat F, Ruffle F, Commes T, Marti J.

Nucleic Acids Res. 2007;35(17):e108. Epub 2007 Aug 20.

PMID:
17709346
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The impact of SNPs on the interpretation of SAGE and MPSS experimental data.

Silva AP, De Souza JE, Galante PA, Riggins GJ, De Souza SJ, Camargo AA.

Nucleic Acids Res. 2004 Nov 23;32(20):6104-10. Print 2004.

PMID:
15562001
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A large quantity of novel human antisense transcripts detected by LongSAGE.

Ge X, Wu Q, Jung YC, Chen J, Wang SM.

Bioinformatics. 2006 Oct 15;22(20):2475-9. Epub 2006 Aug 7.

PMID:
16895931
[PubMed - indexed for MEDLINE]
Free Article
13.

Serial Analysis of Gene Expression (SAGE): 13 years of application in research.

Anisimov SV.

Curr Pharm Biotechnol. 2008 Oct;9(5):338-50. Review.

PMID:
18855686
[PubMed - indexed for MEDLINE]
14.

Abundant transcripts of malting barley identified by serial analysis of gene expression (SAGE).

White J, Pacey-Miller T, Crawford A, Cordeiro G, Barbary D, Bundock P, Henry R.

Plant Biotechnol J. 2006 May;4(3):289-301.

PMID:
17147635
[PubMed - indexed for MEDLINE]
15.

Serial analysis of gene expression (SAGE): experimental method and data analysis.

Blackshaw S, St Croix B, Polyak K, Kim JB, Cai L.

Curr Protoc Hum Genet. 2007 Apr;Chapter 11:Unit 11.7. doi: 10.1002/0471142905.hg1107s53.

PMID:
18428405
[PubMed - indexed for MEDLINE]
16.

PVY(NTN) elicits a diverse gene expression response in different potato genotypes in the first 12 h after inoculation.

Baebler S, Krecic-Stres H, Rotter A, Kogovsek P, Cankar K, Kok EJ, Gruden K, Kovac M, Zel J, Pompe-Novak M, Ravnikar M.

Mol Plant Pathol. 2009 Mar;10(2):263-75. doi: 10.1111/j.1364-3703.2008.00530.x.

PMID:
19236574
[PubMed - indexed for MEDLINE]
17.

Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies.

Hornshøj H, Bendixen E, Conley LN, Andersen PK, Hedegaard J, Panitz F, Bendixen C.

BMC Genomics. 2009 Jan 19;10:30. doi: 10.1186/1471-2164-10-30.

PMID:
19152685
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The potato StLTPa7 gene displays a complex Ca-associated pattern of expression during the early stage of potato-Ralstonia solanacearum interaction.

Gao G, Jin LP, Xie KY, Qu DY.

Mol Plant Pathol. 2009 Jan;10(1):15-27. doi: 10.1111/j.1364-3703.2008.00508.x.

PMID:
19161349
[PubMed - indexed for MEDLINE]
19.

Molecular regulation of somatic embryogenesis in potato: an auxin led perspective.

Sharma SK, Millam S, Hedley PE, McNicol J, Bryan GJ.

Plant Mol Biol. 2008 Sep;68(1-2):185-201. doi: 10.1007/s11103-008-9360-2. Epub 2008 Jun 16.

PMID:
18553172
[PubMed - indexed for MEDLINE]
20.

Exploring plant transcriptomes using ultra high-throughput sequencing.

Wang L, Li P, Brutnell TP.

Brief Funct Genomics. 2010 Mar;9(2):118-28. doi: 10.1093/bfgp/elp057. Epub 2010 Feb 3. Review.

PMID:
20130067
[PubMed - indexed for MEDLINE]

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