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Results: 1 to 20 of 371

1.

Crystal structures of the thi-box riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition.

Edwards TE, Ferré-D'Amaré AR.

Structure. 2006 Sep;14(9):1459-68.

PMID:
16962976
[PubMed - indexed for MEDLINE]
Free Article
2.

The THI-box riboswitch, or how RNA binds thiamin pyrophosphate.

Miranda-Ríos J.

Structure. 2007 Mar;15(3):259-65. Review.

PMID:
17355861
[PubMed - indexed for MEDLINE]
Free Article
3.

Phosphate-group recognition by the aptamer domain of the thiamine pyrophosphate sensing riboswitch.

Noeske J, Richter C, Stirnal E, Schwalbe H, Wöhnert J.

Chembiochem. 2006 Sep;7(9):1451-6.

PMID:
16871614
[PubMed - indexed for MEDLINE]
4.

Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch.

Serganov A, Polonskaia A, Phan AT, Breaker RR, Patel DJ.

Nature. 2006 Jun 29;441(7097):1167-71. Epub 2006 May 21.

PMID:
16728979
[PubMed - indexed for MEDLINE]
5.

Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch.

Thore S, Frick C, Ban N.

J Am Chem Soc. 2008 Jul 2;130(26):8116-7. doi: 10.1021/ja801708e. Epub 2008 Jun 6.

PMID:
18533652
[PubMed - indexed for MEDLINE]
6.

Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand.

Thore S, Leibundgut M, Ban N.

Science. 2006 May 26;312(5777):1208-11. Epub 2006 May 4.

PMID:
16675665
[PubMed - indexed for MEDLINE]
Free Article
7.

The ligand-free state of the TPP riboswitch: a partially folded RNA structure.

Ali M, Lipfert J, Seifert S, Herschlag D, Doniach S.

J Mol Biol. 2010 Feb 12;396(1):153-65. doi: 10.1016/j.jmb.2009.11.030. Epub 2009 Nov 17.

PMID:
19925806
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Thermodynamic examination of the pyrophosphate sensor helix in the thiamine pyrophosphate riboswitch.

Furniss S, Grover N.

RNA. 2011 Apr;17(4):710-7. doi: 10.1261/rna.2263211. Epub 2011 Mar 2.

PMID:
21367973
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine.

Sudarsan N, Cohen-Chalamish S, Nakamura S, Emilsson GM, Breaker RR.

Chem Biol. 2005 Dec;12(12):1325-35.

PMID:
16356850
[PubMed - indexed for MEDLINE]
Free Article
10.

Molecular basis of gene regulation by the THI-box riboswitch.

Ontiveros-Palacios N, Smith AM, Grundy FJ, Soberon M, Henkin TM, Miranda-Ríos J.

Mol Microbiol. 2008 Feb;67(4):793-803. doi: 10.1111/j.1365-2958.2007.06088.x. Epub 2007 Dec 19.

PMID:
18179415
[PubMed - indexed for MEDLINE]
11.

Structural studies of the purine and SAM binding riboswitches.

Gilbert SD, Montange RK, Stoddard CD, Batey RT.

Cold Spring Harb Symp Quant Biol. 2006;71:259-68. Review.

PMID:
17381305
[PubMed - indexed for MEDLINE]
12.

Flipping off the riboswitch: RNA structures that control gene expression.

Sashital DG, Butcher SE.

ACS Chem Biol. 2006 Jul 21;1(6):341-5. Review.

PMID:
17163768
[PubMed - indexed for MEDLINE]
13.

Conformational changes in the expression domain of the Escherichia coli thiM riboswitch.

Rentmeister A, Mayer G, Kuhn N, Famulok M.

Nucleic Acids Res. 2007;35(11):3713-22. Epub 2007 May 21.

PMID:
17517779
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch.

Kulshina N, Edwards TE, Ferré-D'Amaré AR.

RNA. 2010 Jan;16(1):186-96. doi: 10.1261/rna.1847310. Epub 2009 Nov 30.

PMID:
19948769
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Riboswitches: small-molecule recognition by gene regulatory RNAs.

Edwards TE, Klein DJ, Ferré-D'Amaré AR.

Curr Opin Struct Biol. 2007 Jun;17(3):273-9. Epub 2007 Jun 15. Review.

PMID:
17574837
[PubMed - indexed for MEDLINE]
16.

Probing riboswitch-ligand interactions using thiamine pyrophosphate analogues.

Chen L, Cressina E, Dixon N, Erixon K, Agyei-Owusu K, Micklefield J, Smith AG, Abell C, Leeper FJ.

Org Biomol Chem. 2012 Aug 14;10(30):5924-31. doi: 10.1039/c2ob07116a. Epub 2012 Apr 19.

PMID:
22514012
[PubMed - indexed for MEDLINE]
17.

Identification of novel ligands for thiamine pyrophosphate (TPP) riboswitches.

Cressina E, Chen L, Moulin M, Leeper FJ, Abell C, Smith AG.

Biochem Soc Trans. 2011 Apr;39(2):652-7. doi: 10.1042/BST0390652. Review.

PMID:
21428956
[PubMed - indexed for MEDLINE]
18.

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression.

Winkler W, Nahvi A, Breaker RR.

Nature. 2002 Oct 31;419(6910):952-6. Epub 2002 Oct 16.

PMID:
12410317
[PubMed - indexed for MEDLINE]
19.

Folding energy landscape of the thiamine pyrophosphate riboswitch aptamer.

Anthony PC, Perez CF, García-García C, Block SM.

Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1485-9. doi: 10.1073/pnas.1115045109. Epub 2012 Jan 4.

PMID:
22219369
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Structure of the SAM-II riboswitch bound to S-adenosylmethionine.

Gilbert SD, Rambo RP, Van Tyne D, Batey RT.

Nat Struct Mol Biol. 2008 Feb;15(2):177-82. doi: 10.1038/nsmb.1371. Epub 2008 Jan 20.

PMID:
18204466
[PubMed - indexed for MEDLINE]

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