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Results: 1 to 20 of 1144

1.

A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls.

Titulaer MK, Siccama I, Dekker LJ, van Rijswijk AL, Heeren RM, Sillevis Smitt PA, Luider TM.

BMC Bioinformatics. 2006 Sep 5;7:403.

PMID:
16953879
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

BioSunMS: a plug-in-based software for the management of patients information and the analysis of peptide profiles from mass spectrometry.

Cao Y, Wang N, Ying X, Li A, Wang H, Zhang X, Li W.

BMC Med Inform Decis Mak. 2009 Feb 17;9:13. doi: 10.1186/1472-6947-9-13.

PMID:
19220920
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting.

Samuelsson J, Dalevi D, Levander F, Rögnvaldsson T.

Bioinformatics. 2004 Dec 12;20(18):3628-35. Epub 2004 Aug 5.

PMID:
15297302
[PubMed - indexed for MEDLINE]
Free Article
4.

A software application for comparing large numbers of high resolution MALDI-FTICR MS spectra demonstrated by searching candidate biomarkers for glioma blood vessel formation.

Titulaer MK, Mustafa DA, Siccama I, Konijnenburg M, Burgers PC, Andeweg AC, Smitt PA, Kros JM, Luider TM.

BMC Bioinformatics. 2008 Mar 1;9:133. doi: 10.1186/1471-2105-9-133.

PMID:
18312684
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments.

Allmer J, Kuhlgert S, Hippler M.

BMC Bioinformatics. 2008 Jul 7;9:302. doi: 10.1186/1471-2105-9-302.

PMID:
18605993
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Increased identification of peptides by enhanced data processing of high-resolution MALDI TOF/TOF mass spectra prior to database searching.

Rejtar T, Chen HS, Andreev V, Moskovets E, Karger BL.

Anal Chem. 2004 Oct 15;76(20):6017-28.

PMID:
15481949
[PubMed - indexed for MEDLINE]
7.

Identification of 2D-gel proteins: a comparison of MALDI/TOF peptide mass mapping to mu LC-ESI tandem mass spectrometry.

Lim H, Eng J, Yates JR 3rd, Tollaksen SL, Giometti CS, Holden JF, Adams MW, Reich CI, Olsen GJ, Hays LG.

J Am Soc Mass Spectrom. 2003 Sep;14(9):957-70.

PMID:
12954164
[PubMed - indexed for MEDLINE]
Free Article
8.

Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.

Slysz GW, Baker CA, Bozsa BM, Dang A, Percy AJ, Bennett M, Schriemer DC.

BMC Bioinformatics. 2009 May 27;10:162. doi: 10.1186/1471-2105-10-162.

PMID:
19473537
[PubMed - indexed for MEDLINE]
Free PMC Article
9.
10.

Sequit: software for de novo peptide sequencing by matrix-assisted laser desorption/ionization post-source decay mass spectrometry.

Demine R, Walden P.

Rapid Commun Mass Spectrom. 2004;18(8):907-13.

PMID:
15095361
[PubMed - indexed for MEDLINE]
11.

Data pre-processing in liquid chromatography-mass spectrometry-based proteomics.

Zhang X, Asara JM, Adamec J, Ouzzani M, Elmagarmid AK.

Bioinformatics. 2005 Nov 1;21(21):4054-9. Epub 2005 Sep 8.

PMID:
16150809
[PubMed - indexed for MEDLINE]
Free Article
13.

De novo peptide sequencing using exhaustive enumeration of peptide composition.

Olson MT, Epstein JA, Yergey AL.

J Am Soc Mass Spectrom. 2006 Aug;17(8):1041-9. Epub 2006 Jun 2.

PMID:
16735127
[PubMed - indexed for MEDLINE]
Free Article
14.

MSDash: mass spectrometry database and search.

Wu Z, Lajoie G, Ma B.

Comput Syst Bioinformatics Conf. 2008;7:63-71.

PMID:
19642269
[PubMed - indexed for MEDLINE]
Free Article
15.

Structural characterization of proteins and peptides.

Deutzmann R.

Methods Mol Med. 2004;94:269-97.

PMID:
14959836
[PubMed - indexed for MEDLINE]
16.

A high-resolution scanning microprobe matrix-assisted laser desorption/ionization ion source for imaging analysis on an ion trap/Fourier transform ion cyclotron resonance mass spectrometer.

Koestler M, Kirsch D, Hester A, Leisner A, Guenther S, Spengler B.

Rapid Commun Mass Spectrom. 2008 Oct;22(20):3275-85. doi: 10.1002/rcm.3733.

PMID:
18819119
[PubMed - indexed for MEDLINE]
17.

Independent component analysis for the extraction of reliable protein signal profiles from MALDI-TOF mass spectra.

Mantini D, Petrucci F, Del Boccio P, Pieragostino D, Di Nicola M, Lugaresi A, Federici G, Sacchetta P, Di Ilio C, Urbani A.

Bioinformatics. 2008 Jan 1;24(1):63-70. Epub 2007 Nov 14.

PMID:
18003646
[PubMed - indexed for MEDLINE]
Free Article
18.

CHASE, a charge-assisted sequencing algorithm for automated homology-based protein identifications with matrix-assisted laser desorption/ionization time-of-flight post-source decay fragmentation data.

Raucci G, Gabrielli M, Novelli S, Picariello G, Collins SH.

J Mass Spectrom. 2005 Apr;40(4):475-88.

PMID:
15712359
[PubMed - indexed for MEDLINE]
19.

pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry.

Wang LH, Li DQ, Fu Y, Wang HP, Zhang JF, Yuan ZF, Sun RX, Zeng R, He SM, Gao W.

Rapid Commun Mass Spectrom. 2007;21(18):2985-91.

PMID:
17702057
[PubMed - indexed for MEDLINE]
20.

Using BiblioSpec for creating and searching tandem MS peptide libraries.

Frewen B, MacCoss MJ.

Curr Protoc Bioinformatics. 2007 Dec;Chapter 13:Unit 13.7. doi: 10.1002/0471250953.bi1307s20.

PMID:
18428681
[PubMed - indexed for MEDLINE]

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