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Results: 1 to 20 of 106

1.

STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments.

Diskin SJ, Eck T, Greshock J, Mosse YP, Naylor T, Stoeckert CJ Jr, Weber BL, Maris JM, Grant GR.

Genome Res. 2006 Sep;16(9):1149-58. Epub 2006 Aug 9.

PMID:
16899652
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Assessing the significance of conserved genomic aberrations using high resolution genomic microarrays.

Guttman M, Mies C, Dudycz-Sulicz K, Diskin SJ, Baldwin DA, Stoeckert CJ Jr, Grant GR.

PLoS Genet. 2007 Aug;3(8):e143.

PMID:
17722985
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Accurate detection of aneuploidies in array CGH and gene expression microarray data.

Myers CL, Dunham MJ, Kung SY, Troyanskaya OG.

Bioinformatics. 2004 Dec 12;20(18):3533-43. Epub 2004 Jul 29.

PMID:
15284100
[PubMed - indexed for MEDLINE]
Free Article
4.

Genome-wide identification of significant aberrations in cancer genome.

Yuan X, Yu G, Hou X, Shih IeM, Clarke R, Zhang J, Hoffman EP, Wang RR, Zhang Z, Wang Y.

BMC Genomics. 2012 Jul 27;13:342. doi: 10.1186/1471-2164-13-342.

PMID:
22839576
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Visualization-based discovery and analysis of genomic aberrations in microarray data.

Myers CL, Chen X, Troyanskaya OG.

BMC Bioinformatics. 2005 Jun 13;6:146.

PMID:
15953389
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

CGcgh: a tool for molecular karyotyping using DNA microarray-based comparative genomic hybridization (array-CGH).

Lee YS, Chao A, Chao AS, Chang SD, Chen CH, Wu WM, Wang TH, Wang HS.

J Biomed Sci. 2008 Nov;15(6):687-96. doi: 10.1007/s11373-008-9275-6. Epub 2008 Aug 19.

PMID:
18712492
[PubMed - indexed for MEDLINE]
7.

Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast.

Hawthorn L, Luce J, Stein L, Rothschild J.

BMC Cancer. 2010 Aug 27;10:460. doi: 10.1186/1471-2407-10-460.

PMID:
20799942
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A method for calling gains and losses in array CGH data.

Wang P, Kim Y, Pollack J, Narasimhan B, Tibshirani R.

Biostatistics. 2005 Jan;6(1):45-58.

PMID:
15618527
[PubMed - indexed for MEDLINE]
Free Article
9.

CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

PMID:
15807904
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Denoising array-based comparative genomic hybridization data using wavelets.

Hsu L, Self SG, Grove D, Randolph T, Wang K, Delrow JJ, Loo L, Porter P.

Biostatistics. 2005 Apr;6(2):211-26.

PMID:
15772101
[PubMed - indexed for MEDLINE]
Free Article
11.

SeeGH--a software tool for visualization of whole genome array comparative genomic hybridization data.

Chi B, DeLeeuw RJ, Coe BP, MacAulay C, Lam WL.

BMC Bioinformatics. 2004 Feb 9;5:13.

PMID:
15040819
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genomic profiling by array comparative genomic hybridization reveals novel DNA copy number changes in breast phyllodes tumours.

Kuijper A, Snijders AM, Berns EM, Kuenen-Boumeester V, van der Wall E, Albertson DG, van Diest PJ.

Cell Oncol. 2009;31(1):31-9.

PMID:
19096148
[PubMed - indexed for MEDLINE]
13.

Genome-wide analysis of DNA copy number alterations and gene expression in gastric cancer.

Tsukamoto Y, Uchida T, Karnan S, Noguchi T, Nguyen LT, Tanigawa M, Takeuchi I, Matsuura K, Hijiya N, Nakada C, Kishida T, Kawahara K, Ito H, Murakami K, Fujioka T, Seto M, Moriyama M.

J Pathol. 2008 Dec;216(4):471-82. doi: 10.1002/path.2424.

PMID:
18798223
[PubMed - indexed for MEDLINE]
14.

Clinical array-based karyotyping of breast cancer with equivocal HER2 status resolves gene copy number and reveals chromosome 17 complexity.

Gunn S, Yeh IT, Lytvak I, Tirtorahardjo B, Dzidic N, Zadeh S, Kim J, McCaskill C, Lim L, Gorre M, Mohammed M.

BMC Cancer. 2010 Jul 28;10:396. doi: 10.1186/1471-2407-10-396.

PMID:
20667129
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data.

Margolin AA, Greshock J, Naylor TL, Mosse Y, Maris JM, Bignell G, Saeed AI, Quackenbush J, Weber BL.

Bioinformatics. 2005 Aug 1;21(15):3308-11. Epub 2005 May 19.

PMID:
15905276
[PubMed - indexed for MEDLINE]
Free Article
16.

High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization.

Nakao K, Mehta KR, Fridlyand J, Moore DH, Jain AN, Lafuente A, Wiencke JW, Terdiman JP, Waldman FM.

Carcinogenesis. 2004 Aug;25(8):1345-57. Epub 2004 Mar 4.

PMID:
15001537
[PubMed - indexed for MEDLINE]
Free Article
17.

High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays.

Urban AE, Korbel JO, Selzer R, Richmond T, Hacker A, Popescu GV, Cubells JF, Green R, Emanuel BS, Gerstein MB, Weissman SM, Snyder M.

Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4534-9. Epub 2006 Mar 14.

PMID:
16537408
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A flexible rank-based framework for detecting copy number aberrations from array data.

LaFramboise T, Winckler W, Thomas RK.

Bioinformatics. 2009 Mar 15;25(6):722-8. doi: 10.1093/bioinformatics/btp063. Epub 2009 Jan 28.

PMID:
19176555
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors.

Baumbusch LO, Aarøe J, Johansen FE, Hicks J, Sun H, Bruhn L, Gunderson K, Naume B, Kristensen VN, Liestøl K, Børresen-Dale AL, Lingjaerde OC.

BMC Genomics. 2008 Aug 8;9:379. doi: 10.1186/1471-2164-9-379.

PMID:
18691401
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays.

Hur Y, Lee H.

BMC Bioinformatics. 2011 May 11;12:146. doi: 10.1186/1471-2105-12-146.

PMID:
21569311
[PubMed - indexed for MEDLINE]
Free PMC Article

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