Similar articles for PMID: 16847934

Year	Number of Results
1991	3
1994	1
1995	1
1999	1
2000	2
2001	1
2003	1
2004	4
2005	11
2006	8
2007	27
2008	20
2009	9
2010	1
2011	2
2013	1
2015	1
2016	1
2017	2
2018	1
2020	1
2024	0

1

PROFASI: A Monte Carlo simulation package for protein folding and aggregation.

Irbäck A, Mohanty S. Irbäck A, et al. J Comput Chem. 2006 Oct;27(13):1548-55. doi: 10.1002/jcc.20452. J Comput Chem. 2006. PMID: 16847934

2

Monte Carlo simulation of protein folding in the presence of residue-specific binding sites.

Rossinsky E, Srebnik S. Rossinsky E, et al. Biopolymers. 2005 Dec 5;79(5):259-68. doi: 10.1002/bip.20365. Biopolymers. 2005. PMID: 16134169

3

The mechanical unfolding of ubiquitin through all-atom Monte Carlo simulation with a Go-type potential.

Kleiner A, Shakhnovich E. Kleiner A, et al. Biophys J. 2007 Mar 15;92(6):2054-61. doi: 10.1529/biophysj.106.081257. Epub 2007 Feb 9. Biophys J. 2007. PMID: 17293405 Free PMC article.

4

PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure.

Boomsma W, Frellsen J, Harder T, Bottaro S, Johansson KE, Tian P, Stovgaard K, Andreetta C, Olsson S, Valentin JB, Antonov LD, Christensen AS, Borg M, Jensen JH, Lindorff-Larsen K, Ferkinghoff-Borg J, Hamelryck T. Boomsma W, et al. J Comput Chem. 2013 Jul 15;34(19):1697-705. doi: 10.1002/jcc.23292. Epub 2013 Apr 26. J Comput Chem. 2013. PMID: 23619610

5

Monte Carlo vs molecular dynamics for all-atom polypeptide folding simulations.

Ulmschneider JP, Ulmschneider MB, Di Nola A. Ulmschneider JP, et al. J Phys Chem B. 2006 Aug 24;110(33):16733-42. doi: 10.1021/jp061619b. J Phys Chem B. 2006. PMID: 16913813

6

Towards realistic description of collective motions in the lattice protein folding models.

Yesylevskyy SO, Demchenko AP. Yesylevskyy SO, et al. Biophys Chem. 2004 Apr 1;109(1):17-40. doi: 10.1016/j.bpc.2003.10.001. Biophys Chem. 2004. PMID: 15059657

7

The SAAP force field: development of the single amino acid potentials for 20 proteinogenic amino acids and Monte Carlo molecular simulation for short peptides.

Iwaoka M, Kimura N, Yosida D, Minezaki T. Iwaoka M, et al. J Comput Chem. 2009 Oct;30(13):2039-55. doi: 10.1002/jcc.21196. J Comput Chem. 2009. PMID: 19140140

8

Lattice models of peptide aggregation: evaluation of conformational search algorithms.

Oakley MT, Garibaldi JM, Hirst JD. Oakley MT, et al. J Comput Chem. 2005 Nov 30;26(15):1638-46. doi: 10.1002/jcc.20306. J Comput Chem. 2005. PMID: 16170797

9

Simulated-tempering replica-exchange method for the multidimensional version.

Mitsutake A. Mitsutake A. J Chem Phys. 2009 Sep 7;131(9):094105. doi: 10.1063/1.3204443. J Chem Phys. 2009. PMID: 19739847

10

Folding of polyglutamine chains.

Chopra M, Reddy AS, Abbott NL, de Pablo JJ. Chopra M, et al. J Chem Phys. 2008 Oct 7;129(13):135102. doi: 10.1063/1.2980043. J Chem Phys. 2008. PMID: 19045125

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