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Results: 1 to 20 of 347

Similar articles for PubMed (Select 16818476)

1.

Automated phylogenetic detection of recombination using a genetic algorithm.

Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD.

Mol Biol Evol. 2006 Oct;23(10):1891-901. Epub 2006 Jul 3.

2.

GARD: a genetic algorithm for recombination detection.

Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD.

Bioinformatics. 2006 Dec 15;22(24):3096-8. Epub 2006 Nov 16.

3.

A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints.

Martin DP, Posada D, Crandall KA, Williamson C.

AIDS Res Hum Retroviruses. 2005 Jan;21(1):98-102.

PMID:
15665649
4.

A Bayesian model for detecting past recombination events in DNA multiple alignments.

McGuire G, Wright F, Prentice MJ.

J Comput Biol. 2000 Feb-Apr;7(1-2):159-70.

PMID:
10890393
5.

A graphical method for detecting recombination in phylogenetic data sets.

McGuire G, Wright F, Prentice MJ.

Mol Biol Evol. 1997 Nov;14(11):1125-31.

6.

Detecting phylogenetic incongruence using BIONJ: an improvement of the ILD test.

Zelwer M, Daubin V.

Mol Phylogenet Evol. 2004 Dec;33(3):687-93.

PMID:
15522796
7.

Detection of recombination in DNA multiple alignments with hidden Markov models.

Husmeier D, Wright F.

J Comput Biol. 2001;8(4):401-27.

PMID:
11571075
8.

SIMPROT: using an empirically determined indel distribution in simulations of protein evolution.

Pang A, Smith AD, Nuin PA, Tillier ER.

BMC Bioinformatics. 2005 Sep 27;6:236.

10.
11.

Robust inference of positive selection from recombining coding sequences.

Scheffler K, Martin DP, Seoighe C.

Bioinformatics. 2006 Oct 15;22(20):2493-9. Epub 2006 Aug 7.

12.

A heuristic Bayesian method for segmenting DNA sequence alignments and detecting evidence for recombination and gene conversion.

Kedzierska A, Husmeier D.

Stat Appl Genet Mol Biol. 2006;5:Article27. Epub 2006 Oct 24.

PMID:
17140392
13.

From a phylogenetic tree to a reticulated network.

Makarenkov V, Legendre P.

J Comput Biol. 2004;11(1):195-212.

PMID:
15072696
14.

Genetic algorithms and parallel processing in maximum-likelihood phylogeny inference.

Brauer MJ, Holder MT, Dries LA, Zwickl DJ, Lewis PO, Hillis DM.

Mol Biol Evol. 2002 Oct;19(10):1717-26.

15.

Evolutionary HMMs: a Bayesian approach to multiple alignment.

Holmes I, Bruno WJ.

Bioinformatics. 2001 Sep;17(9):803-20.

16.

Consequences of recombination on traditional phylogenetic analysis.

Schierup MH, Hein J.

Genetics. 2000 Oct;156(2):879-91.

17.

RDP2: recombination detection and analysis from sequence alignments.

Martin DP, Williamson C, Posada D.

Bioinformatics. 2005 Jan 15;21(2):260-2. Epub 2004 Sep 17.

18.

Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning.

Lemey P, Lott M, Martin DP, Moulton V.

BMC Bioinformatics. 2009 Apr 27;10:126. doi: 10.1186/1471-2105-10-126.

19.

Computing recombination networks from binary sequences.

Huson DH, Kloepper TH.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii159-65.

20.

SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.

Liu K, Warnow TJ, Holder MT, Nelesen SM, Yu J, Stamatakis AP, Linder CR.

Syst Biol. 2012 Jan;61(1):90-106. doi: 10.1093/sysbio/syr095. Epub 2011 Dec 1.

PMID:
22139466
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