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Results: 1 to 20 of 93

1.

Bacterial genotyping by 16S rRNA mass cataloging.

Jackson GW, McNichols RJ, Fox GE, Willson RC.

BMC Bioinformatics. 2006 Jun 23;7:321.

PMID:
16796754
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Microbial identification by mass cataloging.

Zhang Z, Jackson GW, Fox GE, Willson RC.

BMC Bioinformatics. 2006 Mar 8;7:117.

PMID:
16524471
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

16S rRNA gene sequencing for bacterial pathogen identification in the clinical laboratory.

Patel JB.

Mol Diagn. 2001 Dec;6(4):313-21. Review.

PMID:
11774196
[PubMed - indexed for MEDLINE]
4.

Identification of Yersinia pestis and Escherichia coli strains by whole cell and outer membrane protein extracts with mass spectrometry-based proteomics.

Jabbour RE, Wade MM, Deshpande SV, Stanford MF, Wick CH, Zulich AW, Snyder AP.

J Proteome Res. 2010 Jul 2;9(7):3647-55. doi: 10.1021/pr100402y.

PMID:
20486690
[PubMed - indexed for MEDLINE]
5.

Identification of RNA molecules by specific enzyme digestion and mass spectrometry: software for and implementation of RNA mass mapping.

Matthiesen R, Kirpekar F.

Nucleic Acids Res. 2009 Apr;37(6):e48. doi: 10.1093/nar/gkp139. Epub 2009 Mar 5.

PMID:
19264806
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level.

Cilia V, Lafay B, Christen R.

Mol Biol Evol. 1996 Mar;13(3):451-61.

PMID:
8742634
[PubMed - indexed for MEDLINE]
Free Article
7.

Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.

Dworzanski JP, Snyder AP, Chen R, Zhang H, Wishart D, Li L.

Anal Chem. 2004 Apr 15;76(8):2355-66.

PMID:
15080748
[PubMed - indexed for MEDLINE]
8.

RNA polymerase beta subunit (rpoB) gene and the 16S-23S rRNA intergenic transcribed spacer region (ITS) as complementary molecular markers in addition to the 16S rRNA gene for phylogenetic analysis and identification of the species of the family Mycoplasmataceae.

Volokhov DV, Simonyan V, Davidson MK, Chizhikov VE.

Mol Phylogenet Evol. 2012 Jan;62(1):515-28. doi: 10.1016/j.ympev.2011.11.002. Epub 2011 Nov 17.

PMID:
22115576
[PubMed - indexed for MEDLINE]
9.

RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits.

Teeling H, Gloeckner FO.

BMC Bioinformatics. 2006 Feb 13;7:66.

PMID:
16476165
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

[16S rRNA gene sequencing for pathogen identification from clinical specimens].

Lu XX, Wu W, Wang M, Huang YF.

Zhonghua Yi Xue Za Zhi. 2008 Jan 8;88(2):123-6. Chinese.

PMID:
18353221
[PubMed - indexed for MEDLINE]
11.

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.

Hummel J, Niemann M, Wienkoop S, Schulze W, Steinhauser D, Selbig J, Walther D, Weckwerth W.

BMC Bioinformatics. 2007 Jun 23;8:216.

PMID:
17587460
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset.

Zhang Z, Willson RC, Fox GE.

Bioinformatics. 2002 Feb;18(2):244-50.

PMID:
11847072
[PubMed - indexed for MEDLINE]
Free Article
13.

Multiple copies of 16s rRNA gene affect the restriction patterns and DGGE profile as revealed by analysis of genome database.

Kang YJ, Cheng J, Mei LJ, Hu J, Piao Z, Yin SX.

Mikrobiologiia. 2010 Sep-Oct;79(5):664-71.

PMID:
21090508
[PubMed - indexed for MEDLINE]
14.

STITCH: algorithm to splice, trim, identify, track, and capture the uniqueness of 16S rRNAs sequence pairs using public or in-house database.

Zhu D, Vaishampayan PA, Venkateswaran K, Fox GE.

Microb Ecol. 2011 Apr;61(3):669-75. doi: 10.1007/s00248-010-9779-2. Epub 2010 Nov 27.

PMID:
21113709
[PubMed - indexed for MEDLINE]
15.

Genetic comparison of Bacillus anthracis and its close relatives using amplified fragment length polymorphism and polymerase chain reaction analysis.

Jackson PJ, Hill KK, Laker MT, Ticknor LO, Keim P.

J Appl Microbiol. 1999 Aug;87(2):263-9.

PMID:
10475963
[PubMed - indexed for MEDLINE]
16.

Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16S rRNA gene sequencing for species identification of nonfermenting bacteria.

Mellmann A, Cloud J, Maier T, Keckevoet U, Ramminger I, Iwen P, Dunn J, Hall G, Wilson D, Lasala P, Kostrzewa M, Harmsen D.

J Clin Microbiol. 2008 Jun;46(6):1946-54. doi: 10.1128/JCM.00157-08. Epub 2008 Apr 9.

PMID:
18400920
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Rapid identification of bacteria from positive blood cultures by terminal restriction fragment length polymorphism profile analysis of the 16S rRNA gene.

Christensen JE, Stencil JA, Reed KD.

J Clin Microbiol. 2003 Aug;41(8):3790-800.

PMID:
12904391
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Suitability of partial 16S ribosomal RNA gene sequence analysis for the identification of dangerous bacterial pathogens.

Ruppitsch W, Stöger A, Indra A, Grif K, Schabereiter-Gurtner C, Hirschl A, Allerberger F.

J Appl Microbiol. 2007 Mar;102(3):852-9.

PMID:
17309636
[PubMed - indexed for MEDLINE]
19.

16S ribosomal RNA sequence-based identification of veterinary clinical bacteria.

Cai H, Archambault M, Prescott JF.

J Vet Diagn Invest. 2003 Sep;15(5):465-9.

PMID:
14535548
[PubMed - indexed for MEDLINE]
Free Article
20.

[Analysis of bacterial diversity of kefir grains by denaturing gradient gel electrophoresis and 16S rDNA sequencing].

Wang YY, Li HR, Jia SF, Wu ZJ, Guo BH.

Wei Sheng Wu Xue Bao. 2006 Apr;46(2):310-3. Chinese.

PMID:
16736598
[PubMed - indexed for MEDLINE]
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