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Results: 1 to 20 of 173

1.

A quality assessment survey of SNP genotyping laboratories.

Lahermo P, Liljedahl U, Alnaes G, Axelsson T, Brookes AJ, Ellonen P, Groop PH, Halldén C, Holmberg D, Holmberg K, Keinänen M, Kepp K, Kere J, Kiviluoma P, Kristensen V, Lindgren C, Odeberg J, Osterman P, Parkkonen M, Saarela J, Sterner M, Strömqvist L, Talas U, Wessman M, Palotie A, Syvänen AC.

Hum Mutat. 2006 Jul;27(7):711-4.

PMID:
16786507
[PubMed - indexed for MEDLINE]
2.

European external quality control study on the competence of laboratories to recognize rare sequence variants resulting in unusual genotyping results.

Márki-Zay J, Klein CL, Gancberg D, Schimmel HG, Dux L.

Clin Chem. 2009 Apr;55(4):739-47. doi: 10.1373/clinchem.2008.112102. Epub 2009 Feb 20.

PMID:
19233919
[PubMed - indexed for MEDLINE]
Free Article
3.

Automatic scoring and quality assessment using accuracy bounds for FP-TDI SNP genotyping data.

Kschischo M, Kern R, Gieger C, Steinhauser M, Tolle R.

Appl Bioinformatics. 2005;4(2):75-84.

PMID:
16128609
[PubMed - indexed for MEDLINE]
4.

Benchmark for evaluating the quality of DNA sequencing: proposal from an international external quality assessment scheme.

Patton SJ, Wallace AJ, Elles R.

Clin Chem. 2006 Apr;52(4):728-36. Epub 2006 Feb 2.

PMID:
16455867
[PubMed - indexed for MEDLINE]
Free Article
5.

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.

Xiao Y, Segal MR, Yang YH, Yeh RF.

Bioinformatics. 2007 Jun 15;23(12):1459-67. Epub 2007 Apr 25.

PMID:
17459966
[PubMed - indexed for MEDLINE]
Free Article
6.

Dynamic variable selection in SNP genotype autocalling from APEX microarray data.

Podder M, Welch WJ, Zamar RH, Tebbutt SJ.

BMC Bioinformatics. 2006 Nov 30;7:521.

PMID:
17137502
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Illumina DNA test panel-based genotyping of whole genome amplified-DNA extracted from hair samples: performance and agreement with genotyping results from genomic DNA from buccal cells.

Agalliu I, Schweitzer PA, Leanza SM, Burk RD, Rohan TE.

Clin Chem Lab Med. 2009;47(5):516-22. doi: 10.1515/CCLM.2009.106.

PMID:
19397482
[PubMed - indexed for MEDLINE]
8.

SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays.

Hua J, Craig DW, Brun M, Webster J, Zismann V, Tembe W, Joshipura K, Huentelman MJ, Dougherty ER, Stephan DA.

Bioinformatics. 2007 Jan 1;23(1):57-63. Epub 2006 Oct 24.

PMID:
17062589
[PubMed - indexed for MEDLINE]
Free Article
9.

Estimation of the rate of SNP genotyping errors from DNA extracted from different tissues.

Montgomery GW, Campbell MJ, Dickson P, Herbert S, Siemering K, Ewen-White KR, Visscher PM, Martin NG.

Twin Res Hum Genet. 2005 Aug;8(4):346-52.

PMID:
16176719
[PubMed - indexed for MEDLINE]
10.

Parallel optimization and genotyping of multiple single-nucleotide polymorphism markers by sample pooling approach using cycling-gradient CE with multiple injections.

Minarik M, Benesova L, Fantova L, Horacek J, Heracek J, Loukola A.

Electrophoresis. 2006 Oct;27(19):3856-63.

PMID:
16972303
[PubMed - indexed for MEDLINE]
11.

High concordance of bovine single nucleotide polymorphism genotypes generated using two independent genotyping strategies.

Magee DA, Berkowicz EW, Sikora KM, Sweeney T, Kenny DA, Kelly AK, Evans RD, Wickham BW, Bradley DG, Spillane C, MacHugh DE.

Anim Biotechnol. 2010 Oct;21(4):257-62. doi: 10.1080/10495398.2010.509680.

PMID:
20967645
[PubMed - indexed for MEDLINE]
12.

Robust SNP genotyping by multiplex PCR and arrayed primer extension.

Podder M, Ruan J, Tripp BW, Chu ZE, Tebbutt SJ.

BMC Med Genomics. 2008 Jan 31;1:5. doi: 10.1186/1755-8794-1-5.

PMID:
18237385
[PubMed]
Free PMC Article
13.

Use of bovine single nucleotide polymorphism markers to verify sample tracking in beef processing.

Heaton MP, Keen JE, Clawson ML, Harhay GP, Bauer N, Shultz C, Green BT, Durso L, Chitko-McKown CG, Laegreid WW.

J Am Vet Med Assoc. 2005 Apr 15;226(8):1311-4.

PMID:
15844419
[PubMed - indexed for MEDLINE]
14.

Assessment of two flexible and compatible SNP genotyping platforms: TaqMan SNP Genotyping Assays and the SNPlex Genotyping System.

De la Vega FM, Lazaruk KD, Rhodes MD, Wenz MH.

Mutat Res. 2005 Jun 3;573(1-2):111-35.

PMID:
15829242
[PubMed - indexed for MEDLINE]
15.

KEL6 and KEL7 genotyping with sequence-specific primers.

Renoud KJ, Barracchini K, Byrne KM, Adams S, Pickett A, Caruccio L, Stroncek DF.

Transfusion. 2006 Sep;46(9):1510-4.

PMID:
16965577
[PubMed - indexed for MEDLINE]
16.

Accuracy of multiplexed Illumina platform-based single-nucleotide polymorphism genotyping compared between genomic and whole genome amplified DNA collected from multiple sources.

Paynter RA, Skibola DR, Skibola CF, Buffler PA, Wiemels JL, Smith MT.

Cancer Epidemiol Biomarkers Prev. 2006 Dec;15(12):2533-6.

PMID:
17164381
[PubMed - indexed for MEDLINE]
Free Article
17.

The TaqMan method for SNP genotyping.

Shen GQ, Abdullah KG, Wang QK.

Methods Mol Biol. 2009;578:293-306. doi: 10.1007/978-1-60327-411-1_19.

PMID:
19768602
[PubMed - indexed for MEDLINE]
18.

Report on the Eleventh International Society of Blood Transfusion Platelet Genotyping and Serology Workshop.

Goldman M, Trudel E, Richard L.

Vox Sang. 2003 Aug;85(2):149-55.

PMID:
12925172
[PubMed - indexed for MEDLINE]
19.

Single nucleotide polymorphism genotyping by mini-primer allele-specific amplification with universal reporter primers for identification of degraded DNA.

Asari M, Watanabe S, Matsubara K, Shiono H, Shimizu K.

Anal Biochem. 2009 Mar 1;386(1):85-90. doi: 10.1016/j.ab.2008.11.023. Epub 2008 Nov 27.

PMID:
19070585
[PubMed - indexed for MEDLINE]
20.

Silhouette scores for assessment of SNP genotype clusters.

Lovmar L, Ahlford A, Jonsson M, Syvänen AC.

BMC Genomics. 2005 Mar 10;6:35.

PMID:
15760469
[PubMed - indexed for MEDLINE]
Free PMC Article

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