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Results: 1 to 20 of 183

1.

A new measure for functional similarity of gene products based on Gene Ontology.

Schlicker A, Domingues FS, Rahnenführer J, Lengauer T.

BMC Bioinformatics. 2006 Jun 15;7:302.

PMID:
16776819
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A relation based measure of semantic similarity for Gene Ontology annotations.

Sheehan B, Quigley A, Gaudin B, Dobson S.

BMC Bioinformatics. 2008 Nov 4;9:468. doi: 10.1186/1471-2105-9-468.

PMID:
18983678
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data.

Xu T, Du L, Zhou Y.

BMC Bioinformatics. 2008 Nov 6;9:472. doi: 10.1186/1471-2105-9-472.

PMID:
18986551
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.

Aubry M, Monnier A, Chicault C, de Tayrac M, Galibert MD, Burgun A, Mosser J.

BMC Bioinformatics. 2006 May 4;7:241.

PMID:
16674810
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

GOurmet: a tool for quantitative comparison and visualization of gene expression profiles based on gene ontology (GO) distributions.

Doherty JM, Carmichael LK, Mills JC.

BMC Bioinformatics. 2006 Mar 17;7:151.

PMID:
16545118
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Combining hierarchical and associative gene ontology relations with textual evidence in estimating gene and gene product similarity.

Sanfilippo A, Posse C, Gopalan B, Riensche R, Beagley N, Baddeley B, Tratz S, Gregory M.

IEEE Trans Nanobioscience. 2007 Mar;6(1):51-9.

PMID:
17393850
[PubMed - indexed for MEDLINE]
7.

A transversal approach to predict gene product networks from ontology-based similarity.

Chabalier J, Mosser J, Burgun A.

BMC Bioinformatics. 2007 Jul 2;8:235.

PMID:
17605807
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143. doi: 10.1186/1471-2105-9-143.

PMID:
18325104
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

GOChase: correcting errors from Gene Ontology-based annotations for gene products.

Park YR, Park CH, Kim JH.

Bioinformatics. 2005 Mar;21(6):829-31. Epub 2004 Oct 28.

PMID:
15513987
[PubMed - indexed for MEDLINE]
Free Article
10.

Genome wide prediction of protein function via a generic knowledge discovery approach based on evidence integration.

Xiong J, Rayner S, Luo K, Li Y, Chen S.

BMC Bioinformatics. 2006 May 25;7:268.

PMID:
16725034
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Get ready to GO! A biologist's guide to the Gene Ontology.

Lomax J.

Brief Bioinform. 2005 Sep;6(3):298-304. Review.

PMID:
16212777
[PubMed - indexed for MEDLINE]
Free Article
12.

DynGO: a tool for visualizing and mining of Gene Ontology and its associations.

Liu H, Hu ZZ, Wu CH.

BMC Bioinformatics. 2005 Aug 9;6:201.

PMID:
16091147
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Metrics for GO based protein semantic similarity: a systematic evaluation.

Pesquita C, Faria D, Bastos H, Ferreira AE, Falcão AO, Couto FM.

BMC Bioinformatics. 2008 Apr 29;9 Suppl 5:S4. doi: 10.1186/1471-2105-9-S5-S4.

PMID:
18460186
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparative analysis of gene sets in the Gene Ontology space under the multiple hypothesis testing framework.

Zhong S, Tian L, Li C, Storch KF, Wong WH.

Proc IEEE Comput Syst Bioinform Conf. 2004:425-35.

PMID:
16448035
[PubMed - indexed for MEDLINE]
15.

Gene Ontology friendly biclustering of expression profiles.

Liu J, Wang W, Yang J.

Proc IEEE Comput Syst Bioinform Conf. 2004:436-47.

PMID:
16448036
[PubMed - indexed for MEDLINE]
16.

IntelliGO: a new vector-based semantic similarity measure including annotation origin.

Benabderrahmane S, Smail-Tabbone M, Poch O, Napoli A, Devignes MD.

BMC Bioinformatics. 2010 Dec 1;11:588. doi: 10.1186/1471-2105-11-588.

PMID:
21122125
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Gene Ontology term overlap as a measure of gene functional similarity.

Mistry M, Pavlidis P.

BMC Bioinformatics. 2008 Aug 4;9:327. doi: 10.1186/1471-2105-9-327.

PMID:
18680592
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Automatic extension of Gene Ontology with flexible identification of candidate terms.

Lee JB, Kim JJ, Park JC.

Bioinformatics. 2006 Mar 15;22(6):665-70. Epub 2006 Jan 21.

PMID:
16428805
[PubMed - indexed for MEDLINE]
Free Article
19.

FunSimMat: a comprehensive functional similarity database.

Schlicker A, Albrecht M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D434-9. Epub 2007 Oct 11.

PMID:
17932054
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences.

Othman RM, Deris S, Illias RM.

J Biomed Inform. 2008 Feb;41(1):65-81. Epub 2007 Jun 27.

PMID:
17681495
[PubMed - indexed for MEDLINE]
Free Article

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