Format
Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 1 to 20 of 188

1.

Close sequence comparisons are sufficient to identify human cis-regulatory elements.

Prabhakar S, Poulin F, Shoukry M, Afzal V, Rubin EM, Couronne O, Pennacchio LA.

Genome Res. 2006 Jul;16(7):855-63. Epub 2006 Jun 12.

2.

Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons.

Wang QF, Prabhakar S, Chanan S, Cheng JF, Rubin EM, Boffelli D.

Genome Biol. 2007;8(1):R1.

3.

In vivo enhancer analysis of human conserved non-coding sequences.

Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, Afzal V, Black BL, Couronne O, Eisen MB, Visel A, Rubin EM.

Nature. 2006 Nov 23;444(7118):499-502. Epub 2006 Nov 5.

PMID:
17086198
4.

Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional.

Frazer KA, Tao H, Osoegawa K, de Jong PJ, Chen X, Doherty MF, Cox DR.

Genome Res. 2004 Mar;14(3):367-72. Epub 2004 Feb 12.

5.

Detection of potential GDF6 regulatory elements by multispecies sequence comparisons and identification of a skeletal joint enhancer.

Portnoy ME, McDermott KJ, Antonellis A, Margulies EH, Prasad AB; NISC Comparative Sequencing Program, Kingsley DM, Green ED, Mortlock DP.

Genomics. 2005 Sep;86(3):295-305.

PMID:
15979840
6.

Ultraconservation identifies a small subset of extremely constrained developmental enhancers.

Visel A, Prabhakar S, Akiyama JA, Shoukry M, Lewis KD, Holt A, Plajzer-Frick I, Afzal V, Rubin EM, Pennacchio LA.

Nat Genet. 2008 Feb;40(2):158-60. doi: 10.1038/ng.2007.55. Epub 2008 Jan 6.

7.

Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains.

Oeltjen JC, Malley TM, Muzny DM, Miller W, Gibbs RA, Belmont JW.

Genome Res. 1997 Apr;7(4):315-29.

8.

Highly conserved non-coding sequences are associated with vertebrate development.

Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, Vavouri T, Smith SF, North P, Callaway H, Kelly K, Walter K, Abnizova I, Gilks W, Edwards YJ, Cooke JE, Elgar G.

PLoS Biol. 2005 Jan;3(1):e7. Epub 2004 Nov 11.

9.

Ancient noncoding elements conserved in the human genome.

Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S.

Science. 2006 Dec 22;314(5807):1892. Erratum in: Science. 2007 Feb 9;315(5813):766.

10.

Phylogenetic shadowing of primate sequences to find functional regions of the human genome.

Boffelli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, Pachter L, Rubin EM.

Science. 2003 Feb 28;299(5611):1391-4.

11.

Regulatory roles of conserved intergenic domains in vertebrate Dlx bigene clusters.

Ghanem N, Jarinova O, Amores A, Long Q, Hatch G, Park BK, Rubenstein JL, Ekker M.

Genome Res. 2003 Apr;13(4):533-43.

13.
14.

Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes.

Aparicio S, Morrison A, Gould A, Gilthorpe J, Chaudhuri C, Rigby P, Krumlauf R, Brenner S.

Proc Natl Acad Sci U S A. 1995 Feb 28;92(5):1684-8.

15.

Cis-regulatory characterization of sequence conservation surrounding the Hox4 genes.

Punnamoottil B, Herrmann C, Pascual-Anaya J, D'Aniello S, Garcia-Fernàndez J, Akalin A, Becker TS, Rinkwitz S.

Dev Biol. 2010 Apr 15;340(2):269-82. doi: 10.1016/j.ydbio.2010.01.035. Epub 2010 Feb 6.

16.

Comparative transgenic analysis of enhancers from the human SHOX and mouse Shox2 genomic regions.

Rosin JM, Abassah-Oppong S, Cobb J.

Hum Mol Genet. 2013 Aug 1;22(15):3063-76. doi: 10.1093/hmg/ddt163. Epub 2013 Apr 10.

17.

Interpreting mammalian evolution using Fugu genome comparisons.

Ovcharenko I, Stubbs L, Loots GG.

Genomics. 2004 Nov;84(5):890-5.

PMID:
15475268
18.

Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences.

Hughes JR, Cheng JF, Ventress N, Prabhakar S, Clark K, Anguita E, De Gobbi M, de Jong P, Rubin E, Higgs DR.

Proc Natl Acad Sci U S A. 2005 Jul 12;102(28):9830-5. Epub 2005 Jul 5.

19.

Evolution of cis-regulatory sequence and function in Diptera.

Wittkopp PJ.

Heredity (Edinb). 2006 Sep;97(3):139-47. Epub 2006 Jul 19. Review.

20.

Identifying pattern-defined regulatory islands in mammalian genomes.

Cheung TH, Barthel KK, Kwan YL, Liu X.

Proc Natl Acad Sci U S A. 2007 Jun 12;104(24):10116-21. Epub 2007 May 29.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk