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Results: 1 to 20 of 180

1.

Exploration of biological network centralities with CentiBiN.

Junker BH, Koschützki D, Schreiber F.

BMC Bioinformatics. 2006 Apr 21;7:219.

PMID:
16630347
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

CentiLib: comprehensive analysis and exploration of network centralities.

Gräßler J, Koschützki D, Schreiber F.

Bioinformatics. 2012 Apr 15;28(8):1178-9. doi: 10.1093/bioinformatics/bts106. Epub 2012 Mar 5.

PMID:
22390940
[PubMed - indexed for MEDLINE]
Free Article
3.

MAVisto: a tool for the exploration of network motifs.

Schreiber F, Schwöbbermeyer H.

Bioinformatics. 2005 Sep 1;21(17):3572-4. Epub 2005 Jul 14.

PMID:
16020473
[PubMed - indexed for MEDLINE]
Free Article
4.

VANTED: a system for advanced data analysis and visualization in the context of biological networks.

Junker BH, Klukas C, Schreiber F.

BMC Bioinformatics. 2006 Mar 6;7:109.

PMID:
16519817
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

GraphCrunch: a tool for large network analyses.

Milenković T, Lai J, Przulj N.

BMC Bioinformatics. 2008 Jan 30;9:70. doi: 10.1186/1471-2105-9-70.

PMID:
18230190
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

BisoGenet: a new tool for gene network building, visualization and analysis.

Martin A, Ochagavia ME, Rabasa LC, Miranda J, Fernandez-de-Cossio J, Bringas R.

BMC Bioinformatics. 2010 Feb 17;11:91. doi: 10.1186/1471-2105-11-91.

PMID:
20163717
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.

Huan T, Sivachenko AY, Harrison SH, Chen JY.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S5. doi: 10.1186/1471-2105-9-S9-S5.

PMID:
18793469
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

ToPNet--an application for interactive analysis of expression data and biological networks.

Hanisch D, Sohler F, Zimmer R.

Bioinformatics. 2004 Jun 12;20(9):1470-1. Epub 2004 Feb 12.

PMID:
14962941
[PubMed - indexed for MEDLINE]
Free Article
9.

GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networks.

Vlasblom J, Wu S, Pu S, Superina M, Liu G, Orsi C, Wodak SJ.

Bioinformatics. 2006 Sep 1;22(17):2178-9.

PMID:
16921162
[PubMed - indexed for MEDLINE]
Free Article
10.

Analyzing networks with VisANT.

Hu Z, Mellor J, DeLisi C.

Curr Protoc Bioinformatics. 2004 Dec;Chapter 8:Unit 8.8. doi: 10.1002/0471250953.bi0808s08.

PMID:
18428738
[PubMed - indexed for MEDLINE]
11.

Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks.

Werhli AV, Grzegorczyk M, Husmeier D.

Bioinformatics. 2006 Oct 15;22(20):2523-31. Epub 2006 Jul 14.

PMID:
16844710
[PubMed - indexed for MEDLINE]
Free Article
12.

APID2NET: unified interactome graphic analyzer.

Hernandez-Toro J, Prieto C, De las Rivas J.

Bioinformatics. 2007 Sep 15;23(18):2495-7. Epub 2007 Jul 21.

PMID:
17644818
[PubMed - indexed for MEDLINE]
Free Article
13.

In silico Biochemical Reaction Network Analysis (IBRENA): a package for simulation and analysis of reaction networks.

Liu G, Neelamegham S.

Bioinformatics. 2008 Apr 15;24(8):1109-11. doi: 10.1093/bioinformatics/btn061. Epub 2008 Feb 28.

PMID:
18310056
[PubMed - indexed for MEDLINE]
Free Article
14.

Biana: a software framework for compiling biological interactions and analyzing networks.

Garcia-Garcia J, Guney E, Aragues R, Planas-Iglesias J, Oliva B.

BMC Bioinformatics. 2010 Jan 27;11:56. doi: 10.1186/1471-2105-11-56.

PMID:
20105306
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.

Barsky A, Gardy JL, Hancock RE, Munzner T.

Bioinformatics. 2007 Apr 15;23(8):1040-2. Epub 2007 Feb 19.

PMID:
17309895
[PubMed - indexed for MEDLINE]
Free Article
16.

MetaNetter: inference and visualization of high-resolution metabolomic networks.

Jourdan F, Breitling R, Barrett MP, Gilbert D.

Bioinformatics. 2008 Jan 1;24(1):143-5. Epub 2007 Nov 14.

PMID:
18003642
[PubMed - indexed for MEDLINE]
Free Article
17.

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology.

Chalmel F, Primig M.

BMC Bioinformatics. 2008 Feb 6;9:86. doi: 10.1186/1471-2105-9-86.

PMID:
18254954
[PubMed - indexed for MEDLINE]
Free PMC Article
18.
19.

FANMOD: a tool for fast network motif detection.

Wernicke S, Rasche F.

Bioinformatics. 2006 May 1;22(9):1152-3. Epub 2006 Feb 2.

PMID:
16455747
[PubMed - indexed for MEDLINE]
Free Article
20.

POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data.

Gonçalves JP, Grãos M, Valente AX.

J R Soc Interface. 2009 Oct 6;6(39):881-96. doi: 10.1098/rsif.2008.0407. Epub 2008 Nov 28.

PMID:
19091689
[PubMed - indexed for MEDLINE]
Free PMC Article

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