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Results: 1 to 20 of 87

1.

Using pyrosequencing to shed light on deep mine microbial ecology.

Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, Peterson DM, Saar MO, Alexander S, Alexander EC Jr, Rohwer F.

BMC Genomics. 2006 Mar 20;7:57.

PMID:
16549033
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Metagenomics--the key to the uncultured microbes.

Streit WR, Schmitz RA.

Curr Opin Microbiol. 2004 Oct;7(5):492-8. Review.

PMID:
15451504
[PubMed - indexed for MEDLINE]
3.

Proteogenomic approaches for the molecular characterization of natural microbial communities.

Banfield JF, Verberkmoes NC, Hettich RL, Thelen MP.

OMICS. 2005 Winter;9(4):301-33.

PMID:
16402891
[PubMed - indexed for MEDLINE]
4.

Molecular analysis of prokaryotic diversity in the deep subsurface of the former Homestake gold mine, South Dakota, USA.

Rastogi G, Stetler LD, Peyton BM, Sani RK.

J Microbiol. 2009 Aug;47(4):371-84. doi: 10.1007/s12275-008-0249-1. Epub 2009 Sep 9.

PMID:
19763410
[PubMed - indexed for MEDLINE]
5.

Culture-independent characterization of bacterial communities associated with the cold-water coral Lophelia pertusa in the northeastern Gulf of Mexico.

Kellogg CA, Lisle JT, Galkiewicz JP.

Appl Environ Microbiol. 2009 Apr;75(8):2294-303. doi: 10.1128/AEM.02357-08. Epub 2009 Feb 20.

PMID:
19233949
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Seasonal and spatial variations in microbial community structure and diversity in the acid stream draining across an ongoing surface mining site.

Tan GL, Shu WS, Zhou WH, Li XL, Lan CY, Huang LN.

FEMS Microbiol Ecol. 2009 Nov;70(2):121-9. doi: 10.1111/j.1574-6941.2009.00744.x. Epub 2009 Jul 14.

PMID:
19678846
[PubMed - indexed for MEDLINE]
7.

Pyrosequencing reveals diverse and distinct sponge-specific microbial communities in sponges from a single geographical location in Irish waters.

Jackson SA, Kennedy J, Morrissey JP, O'Gara F, Dobson AD.

Microb Ecol. 2012 Jul;64(1):105-16. doi: 10.1007/s00248-011-0002-x. Epub 2012 Jan 28.

PMID:
22281804
[PubMed - indexed for MEDLINE]
8.

Subsurface microbial diversity in deep-granitic-fracture water in Colorado.

Sahl JW, Schmidt R, Swanner ED, Mandernack KW, Templeton AS, Kieft TL, Smith RL, Sanford WE, Callaghan RL, Mitton JB, Spear JR.

Appl Environ Microbiol. 2008 Jan;74(1):143-52. Epub 2007 Nov 2.

PMID:
17981950
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Phylogenetic evidence of noteworthy microflora from the subsurface of the former Homestake gold mine, Lead, South Dakota.

Waddell EJ, Elliott TJ, Vahrenkamp JM, Roggenthen WM, Sani RK, Anderson CM, Bang SS.

Environ Technol. 2010 Jul-Aug;31(8-9):979-91. doi: 10.1080/09593331003789511.

PMID:
20662386
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Microbial communities in subpermafrost saline fracture water at the Lupin Au mine, Nunavut, Canada.

Onstott TC, McGown DJ, Bakermans C, Ruskeeniemi T, Ahonen L, Telling J, Soffientino B, Pfiffner SM, Sherwood-Lollar B, Frape S, Stotler R, Johnson EJ, Vishnivetskaya TA, Rothmel R, Pratt LM.

Microb Ecol. 2009 Nov;58(4):786-807. doi: 10.1007/s00248-009-9553-5. Epub 2009 Jul 1.

PMID:
19568805
[PubMed - indexed for MEDLINE]
11.

Biodiversity and geochemistry of an extremely acidic, low-temperature subterranean environment sustained by chemolithotrophy.

Kimura S, Bryan CG, Hallberg KB, Johnson DB.

Environ Microbiol. 2011 Aug;13(8):2092-104. doi: 10.1111/j.1462-2920.2011.02434.x. Epub 2011 Mar 7.

PMID:
21382147
[PubMed - indexed for MEDLINE]
12.

Archaeal and bacterial communities of heavy metal contaminated acidic waters from zinc mine residues in Sepetiba Bay.

Almeida WI, Vieira RP, Cardoso AM, Silveira CB, Costa RG, Gonzalez AM, Paranhos R, Medeiros JA, Freitas FA, Albano RM, Martins OB.

Extremophiles. 2009 Mar;13(2):263-71. doi: 10.1007/s00792-008-0214-2. Epub 2008 Dec 17.

PMID:
19089530
[PubMed - indexed for MEDLINE]
13.

VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences.

Mori H, Maruyama F, Kurokawa K.

BMC Bioinformatics. 2010 Jun 18;11:332. doi: 10.1186/1471-2105-11-332.

PMID:
20565810
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Microbial and mineralogical characterizations of soils collected from the deep biosphere of the former Homestake gold mine, South Dakota.

Rastogi G, Osman S, Kukkadapu R, Engelhard M, Vaishampayan PA, Andersen GL, Sani RK.

Microb Ecol. 2010 Oct;60(3):539-50. doi: 10.1007/s00248-010-9657-y. Epub 2010 Apr 13.

PMID:
20386898
[PubMed - indexed for MEDLINE]
15.

Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances.

Xu J.

Mol Ecol. 2006 Jun;15(7):1713-31. Review.

PMID:
16689892
[PubMed - indexed for MEDLINE]
16.

Two-component systems in microbial communities: approaches and resources for generating and analyzing metagenomic data sets.

Podar M.

Methods Enzymol. 2007;422:32-46. Review.

PMID:
17628133
[PubMed - indexed for MEDLINE]
17.

Monitoring impact of a pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures.

Engelen B, Meinken K, von Wintzingerode F, Heuer H, Malkomes HP, Backhaus H.

Appl Environ Microbiol. 1998 Aug;64(8):2814-21.

PMID:
9687435
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Functional metagenomic profiling of nine biomes.

Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F.

Nature. 2008 Apr 3;452(7187):629-32. doi: 10.1038/nature06810. Epub 2008 Mar 12. Erratum in: Nature. 2008 Oct 9;455(7214):830.

PMID:
18337718
[PubMed - indexed for MEDLINE]
19.

Bacterial diversity in Solenopsis invicta and Solenopsis geminata ant colonies characterized by 16S amplicon 454 pyrosequencing.

Ishak HD, Plowes R, Sen R, Kellner K, Meyer E, Estrada DA, Dowd SE, Mueller UG.

Microb Ecol. 2011 May;61(4):821-31. doi: 10.1007/s00248-010-9793-4. Epub 2011 Jan 18.

PMID:
21243351
[PubMed - indexed for MEDLINE]
20.

Comparative microbial ecology study of the sediments and the water column of the Río Tinto, an extreme acidic environment.

García-Moyano A, González-Toril E, Aguilera Á, Amils R.

FEMS Microbiol Ecol. 2012 Aug;81(2):303-14. doi: 10.1111/j.1574-6941.2012.01346.x. Epub 2012 Mar 20.

PMID:
22385317
[PubMed - indexed for MEDLINE]

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