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Results: 1 to 20 of 143

1.

BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data.

Marioni JC, Thorne NP, Tavaré S.

Bioinformatics. 2006 May 1;22(9):1144-6. Epub 2006 Mar 13.

PMID:
16533818
[PubMed - indexed for MEDLINE]
Free Article
2.

Continuous-index hidden Markov modelling of array CGH copy number data.

Stjernqvist S, Rydén T, Sköld M, Staaf J.

Bioinformatics. 2007 Apr 15;23(8):1006-14. Epub 2007 Feb 19.

PMID:
17309894
[PubMed - indexed for MEDLINE]
Free Article
3.

A segmentation/clustering model for the analysis of array CGH data.

Picard F, Robin S, Lebarbier E, Daudin JJ.

Biometrics. 2007 Sep;63(3):758-66.

PMID:
17825008
[PubMed - indexed for MEDLINE]
4.

A segmental maximum a posteriori approach to genome-wide copy number profiling.

Andersson R, Bruder CE, Piotrowski A, Menzel U, Nord H, Sandgren J, Hvidsten TR, Diaz de Ståhl T, Dumanski JP, Komorowski J.

Bioinformatics. 2008 Mar 15;24(6):751-8. doi: 10.1093/bioinformatics/btn003. Epub 2008 Jan 19.

PMID:
18204059
[PubMed - indexed for MEDLINE]
Free Article
5.

Integrating copy number polymorphisms into array CGH analysis using a robust HMM.

Shah SP, Xuan X, DeLeeuw RJ, Khojasteh M, Lam WL, Ng R, Murphy KP.

Bioinformatics. 2006 Jul 15;22(14):e431-9.

PMID:
16873504
[PubMed - indexed for MEDLINE]
Free Article
6.

Spatial normalization of array-CGH data.

Neuvial P, Hupé P, Brito I, Liva S, Manié E, Brennetot C, Radvanyi F, Aurias A, Barillot E.

BMC Bioinformatics. 2006 May 22;7:264.

PMID:
16716215
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Flexible and accurate detection of genomic copy-number changes from aCGH.

Rueda OM, Díaz-Uriarte R.

PLoS Comput Biol. 2007 Jun;3(6):e122. Epub 2007 May 16.

PMID:
17590078
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Breakpoint identification and smoothing of array comparative genomic hybridization data.

Jong K, Marchiori E, Meijer G, Vaart AV, Ylstra B.

Bioinformatics. 2004 Dec 12;20(18):3636-7. Epub 2004 Jun 16.

PMID:
15201182
[PubMed - indexed for MEDLINE]
Free Article
9.

Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model.

Broët P, Richardson S.

Bioinformatics. 2006 Apr 15;22(8):911-8. Epub 2006 Feb 2.

PMID:
16455750
[PubMed - indexed for MEDLINE]
Free Article
10.

Classification and feature selection algorithms for multi-class CGH data.

Liu J, Ranka S, Kahveci T.

Bioinformatics. 2008 Jul 1;24(13):i86-95. doi: 10.1093/bioinformatics/btn145.

PMID:
18586749
[PubMed - indexed for MEDLINE]
Free PMC Article
11.
12.

ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays.

Rigaill G, Hupé P, Almeida A, La Rosa P, Meyniel JP, Decraene C, Barillot E.

Bioinformatics. 2008 Mar 15;24(6):768-74. doi: 10.1093/bioinformatics/btn048. Epub 2008 Feb 5.

PMID:
18252739
[PubMed - indexed for MEDLINE]
Free Article
13.

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M.

Bioinformatics. 2006 Dec 15;22(24):3016-24. Epub 2006 Oct 12.

PMID:
17038339
[PubMed - indexed for MEDLINE]
Free Article
14.

Unsupervised segmentation of continuous genomic data.

Day N, Hemmaplardh A, Thurman RE, Stamatoyannopoulos JA, Noble WS.

Bioinformatics. 2007 Jun 1;23(11):1424-6. Epub 2007 Mar 23.

PMID:
17384021
[PubMed - indexed for MEDLINE]
Free Article
15.

Robust smooth segmentation approach for array CGH data analysis.

Huang J, Gusnanto A, O'Sullivan K, Staaf J, Borg A, Pawitan Y.

Bioinformatics. 2007 Sep 15;23(18):2463-9. Epub 2007 Jul 27.

PMID:
17660206
[PubMed - indexed for MEDLINE]
Free Article
16.

Analysis of array CGH data: from signal ratio to gain and loss of DNA regions.

Hupé P, Stransky N, Thiery JP, Radvanyi F, Barillot E.

Bioinformatics. 2004 Dec 12;20(18):3413-22. Epub 2004 Sep 20.

PMID:
15381628
[PubMed - indexed for MEDLINE]
Free Article
17.

HMMGEP: clustering gene expression data using hidden Markov models.

Ji X, Yuan Y, Li-Ling J, Li Y, Sun Z.

Bioinformatics. 2004 Jul 22;20(11):1799-800. Epub 2004 Feb 26.

PMID:
14988130
[PubMed - indexed for MEDLINE]
Free Article
18.

Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models.

Wong WS, Nielsen R.

Bioinformatics. 2007 Aug 15;23(16):2031-7. Epub 2007 Jun 5.

PMID:
17550911
[PubMed - indexed for MEDLINE]
Free Article
19.

A probe-density-based analysis method for array CGH data: simulation, normalization and centralization.

Chen HI, Hsu FH, Jiang Y, Tsai MH, Yang PC, Meltzer PS, Chuang EY, Chen Y.

Bioinformatics. 2008 Aug 15;24(16):1749-56. doi: 10.1093/bioinformatics/btn321. Epub 2008 Jul 4.

PMID:
18603568
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Classification of arrayCGH data using fused SVM.

Rapaport F, Barillot E, Vert JP.

Bioinformatics. 2008 Jul 1;24(13):i375-82. doi: 10.1093/bioinformatics/btn188.

PMID:
18586737
[PubMed - indexed for MEDLINE]
Free PMC Article
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