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Results: 1 to 20 of 124

1.

MACGT: multi-dimensional automated clustering genotyping tool for analysis of microarray-based mini-sequencing data.

Walley DC, Tripp BW, Song YC, Walley KR, Tebbutt SJ.

Bioinformatics. 2006 May 1;22(9):1147-9. Epub 2006 Mar 7.

PMID:
16522668
[PubMed - indexed for MEDLINE]
Free Article
2.

Dynamic variable selection in SNP genotype autocalling from APEX microarray data.

Podder M, Welch WJ, Zamar RH, Tebbutt SJ.

BMC Bioinformatics. 2006 Nov 30;7:521.

PMID:
17137502
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

SNP Chart: an integrated platform for visualization and interpretation of microarray genotyping data.

Tebbutt SJ, Opushnyev IV, Tripp BW, Kassamali AM, Alexander WL, Andersen MI.

Bioinformatics. 2005 Jan 1;21(1):124-7. Epub 2004 Aug 12.

PMID:
15308543
[PubMed - indexed for MEDLINE]
Free Article
4.

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.

Xiao Y, Segal MR, Yang YH, Yeh RF.

Bioinformatics. 2007 Jun 15;23(12):1459-67. Epub 2007 Apr 25.

PMID:
17459966
[PubMed - indexed for MEDLINE]
Free Article
5.

SNiPer: improved SNP genotype calling for Affymetrix 10K GeneChip microarray data.

Huentelman MJ, Craig DW, Shieh AD, Corneveaux JJ, Hu-Lince D, Pearson JV, Stephan DA.

BMC Genomics. 2005 Oct 31;6:149.

PMID:
16262895
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays.

Di X, Matsuzaki H, Webster TA, Hubbell E, Liu G, Dong S, Bartell D, Huang J, Chiles R, Yang G, Shen MM, Kulp D, Kennedy GC, Mei R, Jones KW, Cawley S.

Bioinformatics. 2005 May 1;21(9):1958-63. Epub 2005 Jan 18.

PMID:
15657097
[PubMed - indexed for MEDLINE]
Free Article
7.

Genotyping of single nucleotide polymorphisms by arrayed primer extension.

Tebbutt SJ.

Methods Mol Biol. 2007;382:149-61. doi: 10.1007/978-1-59745-304-2_10.

PMID:
18220230
[PubMed - indexed for MEDLINE]
8.

dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data.

Lin M, Wei LJ, Sellers WR, Lieberfarb M, Wong WH, Li C.

Bioinformatics. 2004 May 22;20(8):1233-40. Epub 2004 Feb 10.

PMID:
14871870
[PubMed - indexed for MEDLINE]
Free Article
9.

Automated SNP genotype clustering algorithm to improve data completeness in high-throughput SNP genotyping datasets from custom arrays.

Smith EM, Littrell J, Olivier M.

Genomics Proteomics Bioinformatics. 2007 Dec;5(3-4):256-9. doi: 10.1016/S1672-0229(08)60014-5.

PMID:
18267308
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Development of an automation system for single nucleotide polymorphisms genotyping using bio-strand, a new three-dimensional microarray.

Tojo Y, Asahina J, Miyashita Y, Takahashi M, Matsumoto N, Hasegawa S, Yohda M, Tajima H.

J Biosci Bioeng. 2005 Feb;99(2):120-4.

PMID:
16233767
[PubMed - indexed for MEDLINE]
Free Article
11.

A self-tuning method for one-chip SNP identification.

Molla M, Shavlik J, Richmond T, Smith S.

Proc IEEE Comput Syst Bioinform Conf. 2004:69-79.

PMID:
16448001
[PubMed - indexed for MEDLINE]
12.

SEAN: SNP prediction and display program utilizing EST sequence clusters.

Huntley D, Baldo A, Johri S, Sergot M.

Bioinformatics. 2006 Feb 15;22(4):495-6. Epub 2005 Dec 15.

PMID:
16357032
[PubMed - indexed for MEDLINE]
Free Article
13.

Empirical Bayes analysis of single nucleotide polymorphisms.

Schwender H, Ickstadt K.

BMC Bioinformatics. 2008 Mar 6;9:144. doi: 10.1186/1471-2105-9-144.

PMID:
18325106
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Algorithms for large-scale genotyping microarrays.

Liu WM, Di X, Yang G, Matsuzaki H, Huang J, Mei R, Ryder TB, Webster TA, Dong S, Liu G, Jones KW, Kennedy GC, Kulp D.

Bioinformatics. 2003 Dec 12;19(18):2397-403.

PMID:
14668223
[PubMed - indexed for MEDLINE]
Free Article
15.

Genotyping of single nucleotide polymorphism using model-based clustering.

Fujisawa H, Eguchi S, Ushijima M, Miyata S, Miki Y, Muto T, Matsuura M.

Bioinformatics. 2004 Mar 22;20(5):718-26. Epub 2004 Jan 29.

PMID:
14751987
[PubMed - indexed for MEDLINE]
Free Article
16.

An automated genotyping system for analysis of HIV-1 and other microbial sequences.

de Oliveira T, Deforche K, Cassol S, Salminen M, Paraskevis D, Seebregts C, Snoeck J, van Rensburg EJ, Wensing AM, van de Vijver DA, Boucher CA, Camacho R, Vandamme AM.

Bioinformatics. 2005 Oct 1;21(19):3797-800. Epub 2005 Aug 2.

PMID:
16076886
[PubMed - indexed for MEDLINE]
Free Article
17.

Primer design and marker clustering for multiplex SNP-IT primer extension genotyping assay using statistical modeling.

Yuryev A, Huang J, Scott KE, Kuebler J, Donaldson M, Phillips MS, Pohl M, Boyce-Jacino MT.

Bioinformatics. 2004 Dec 12;20(18):3526-32. Epub 2004 Jul 29.

PMID:
15284101
[PubMed - indexed for MEDLINE]
Free Article
18.

Seq-SNPing: multiple-alignment tool for SNP discovery, SNP ID identification, and RFLP genotyping.

Chang HW, Chuang LY, Cheng YH, Ho CH, Wen CH, Yang CH.

OMICS. 2009 Jun;13(3):253-60. doi: 10.1089/omi.2008.0058.

PMID:
19514837
[PubMed - indexed for MEDLINE]
19.

Inferential clustering approach for microarray experiments with replicated measurements.

Salicrú M, Vives S, Zheng T.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Oct-Dec;6(4):594-604. doi: 10.1109/TCBB.2008.106.

PMID:
19875858
[PubMed - indexed for MEDLINE]
20.

High-throughput SNP genotyping by SBE/SBH.

Măndoiu II, Prăjescu C.

IEEE Trans Nanobioscience. 2007 Mar;6(1):28-35.

PMID:
17393847
[PubMed - indexed for MEDLINE]

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