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Determinants of the ubiquitin-mediated degradation of the Met4 transcription factor.

Menant A, Baudouin-Cornu P, Peyraud C, Tyers M, Thomas D.

J Biol Chem. 2006 Apr 28;281(17):11744-54. Epub 2006 Feb 23.


[RPN4 the yeast transcription factor promotes the complex defence against methyi, methanesulfonate].

Spasskaia DS, Karpov DS, Mironov AS, Karpov VL.

Mol Biol (Mosk). 2014 Jan-Feb;48(1):166-75. Russian.


Reporter-based growth assay for systematic analysis of protein degradation.

Cohen I, Geffen Y, Ravid G, Ravid T.

J Vis Exp. 2014 Nov 6;(93):e52021. doi: 10.3791/52021.


The basic leucine zipper stress response regulator Yap5 senses high-iron conditions by coordination of [2Fe-2S] clusters.

Rietzschel N, Pierik AJ, Bill E, Lill R, Mühlenhoff U.

Mol Cell Biol. 2015 Jan;35(2):370-8. doi: 10.1128/MCB.01033-14. Epub 2014 Nov 3.


A comprehensive protein-protein interactome for yeast PAS kinase 1 reveals direct inhibition of respiration through the phosphorylation of Cbf1.

DeMille D, Bikman BT, Mathis AD, Prince JT, Mackay JT, Sowa SW, Hall TD, Grose JH.

Mol Biol Cell. 2014 Jul 15;25(14):2199-215. doi: 10.1091/mbc.E13-10-0631. Epub 2014 May 21.


Sky1 regulates the expression of sulfur metabolism genes in response to cisplatin.

Rodríguez-Lombardero S, Vizoso-Vázquez Á, Lombardía LJ, Becerra M, González-Siso MI, Cerdán ME.

Microbiology. 2014 Jul;160(Pt 7):1357-68. doi: 10.1099/mic.0.078402-0. Epub 2014 Apr 24.


Multiple inputs control sulfur-containing amino acid synthesis in Saccharomyces cerevisiae.

Sadhu MJ, Moresco JJ, Zimmer AD, Yates JR 3rd, Rine J.

Mol Biol Cell. 2014 May;25(10):1653-65. doi: 10.1091/mbc.E13-12-0755. Epub 2014 Mar 19.


Ubiquitin signals proteolysis-independent stripping of transcription factors.

Ndoja A, Cohen RE, Yao T.

Mol Cell. 2014 Mar 20;53(6):893-903. doi: 10.1016/j.molcel.2014.02.002. Epub 2014 Mar 6.


Pulse-chase analysis to measure protein degradation.

Simon E, Kornitzer D.

Methods Enzymol. 2014;536:65-75. doi: 10.1016/B978-0-12-420070-8.00006-4.


Discrimination between thermodynamic models of cis-regulation using transcription factor occupancy data.

Zeigler RD, Cohen BA.

Nucleic Acids Res. 2014 Feb;42(4):2224-34. doi: 10.1093/nar/gkt1230. Epub 2013 Nov 27.


Enhancing protein disaggregation restores proteasome activity in aged cells.

Andersson V, Hanzén S, Liu B, Molin M, Nyström T.

Aging (Albany NY). 2013 Nov;5(11):802-12.


Functional analyses of NSF1 in wine yeast using interconnected correlation clustering and molecular analyses.

Bessonov K, Walkey CJ, Shelp BJ, van Vuuren HJ, Chiu D, van der Merwe G.

PLoS One. 2013 Oct 9;8(10):e77192. doi: 10.1371/journal.pone.0077192. eCollection 2013.


Proteasome-mediated processing of Def1, a critical step in the cellular response to transcription stress.

Wilson MD, Harreman M, Taschner M, Reid J, Walker J, Erdjument-Bromage H, Tempst P, Svejstrup JQ.

Cell. 2013 Aug 29;154(5):983-95. doi: 10.1016/j.cell.2013.07.028.


Yeast hEST1A/B (SMG5/6)-like proteins contribute to environment-sensing adaptive gene expression responses.

Lai X, Beilharz T, Au WC, Hammet A, Preiss T, Basrai MA, Heierhorst J.

G3 (Bethesda). 2013 Oct 3;3(10):1649-59. doi: 10.1534/g3.113.006924.


Differential binding of the related transcription factors Pho4 and Cbf1 can tune the sensitivity of promoters to different levels of an induction signal.

Aow JS, Xue X, Run JQ, Lim GF, Goh WS, Clarke ND.

Nucleic Acids Res. 2013 May;41(9):4877-87. doi: 10.1093/nar/gkt210. Epub 2013 Apr 4.


Placing a disrupted degradation motif at the C terminus of proteasome substrates attenuates degradation without impairing ubiquitylation.

Alfassy OS, Cohen I, Reiss Y, Tirosh B, Ravid T.

J Biol Chem. 2013 May 3;288(18):12645-53. doi: 10.1074/jbc.M113.453027. Epub 2013 Mar 21.


A role for iron-sulfur clusters in the regulation of transcription factor Yap5-dependent high iron transcriptional responses in yeast.

Li L, Miao R, Bertram S, Jia X, Ward DM, Kaplan J.

J Biol Chem. 2012 Oct 12;287(42):35709-21. doi: 10.1074/jbc.M112.395533. Epub 2012 Aug 22.


Novel method for screening Saccharomyces cerevisiae mutants with increased sulfur-containing compounds: color-based selection of colonies using the met30 strain.

Tarutina MG, Dutova TA, Yezhova IE, Nishiuchi H, Sineoky SP.

J Biosci Bioeng. 2012 Dec;114(6):619-21. doi: 10.1016/j.jbiosc.2012.07.011. Epub 2012 Aug 11.


Transfer of Ho endonuclease and Ufo1 to the proteasome by the UbL-UbA shuttle protein, Ddi1, analysed by complex formation in vitro.

Voloshin O, Bakhrat A, Herrmann S, Raveh D.

PLoS One. 2012;7(7):e39210. doi: 10.1371/journal.pone.0039210. Epub 2012 Jul 16.


Ubiquitin tagged dominant negative induces degradation of B-ZIP proteins.

Rios-Doria E, Chatterjee R, Zhao J, Rishi V, Vinson C.

Biochem Biophys Res Commun. 2012 Aug 3;424(3):624-8. doi: 10.1016/j.bbrc.2012.07.007. Epub 2012 Jul 10.

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