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Results: 1 to 20 of 84

1.

Similar gene expression profiles do not imply similar tissue functions.

Yanai I, Korbel JO, Boue S, McWeeney SK, Bork P, Lercher MJ.

Trends Genet. 2006 Mar;22(3):132-8. Epub 2006 Feb 9. Review.

PMID:
16480787
[PubMed - indexed for MEDLINE]
2.

Quantifying the relationship between co-expression, co-regulation and gene function.

Allocco DJ, Kohane IS, Butte AJ.

BMC Bioinformatics. 2004 Feb 25;5:18.

PMID:
15053845
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Evolutionary-conserved gene expression response profiles across mammalian tissues.

Chen J, Blackwell TW, Fermin D, Menon R, Chen Y, Gao J, Lee AW, States DJ.

OMICS. 2007 Spring;11(1):96-115.

PMID:
17411398
[PubMed - indexed for MEDLINE]
4.

The functional landscape of mouse gene expression.

Zhang W, Morris QD, Chang R, Shai O, Bakowski MA, Mitsakakis N, Mohammad N, Robinson MD, Zirngibl R, Somogyi E, Laurin N, Eftekharpour E, Sat E, Grigull J, Pan Q, Peng WT, Krogan N, Greenblatt J, Fehlings M, van der Kooy D, Aubin J, Bruneau BG, Rossant J, Blencowe BJ, Frey BJ, Hughes TR.

J Biol. 2004;3(5):21. Epub 2004 Dec 6.

PMID:
15588312
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification.

Yanai I, Benjamin H, Shmoish M, Chalifa-Caspi V, Shklar M, Ophir R, Bar-Even A, Horn-Saban S, Safran M, Domany E, Lancet D, Shmueli O.

Bioinformatics. 2005 Mar 1;21(5):650-9. Epub 2004 Sep 23.

PMID:
15388519
[PubMed - indexed for MEDLINE]
Free Article
6.

Evolutionary conservation of expression profiles between human and mouse orthologous genes.

Liao BY, Zhang J.

Mol Biol Evol. 2006 Mar;23(3):530-40. Epub 2005 Nov 9.

PMID:
16280543
[PubMed - indexed for MEDLINE]
Free Article
7.

Microarray expression profiles of 20.000 genes across 23 healthy porcine tissues.

Hornshøj H, Conley LN, Hedegaard J, Sørensen P, Panitz F, Bendixen C.

PLoS One. 2007 Nov 21;2(11):e1203.

PMID:
18030337
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Expression profile and transcription factor binding site exploration of imprinted genes in human and mouse.

Steinhoff C, Paulsen M, Kielbasa S, Walter J, Vingron M.

BMC Genomics. 2009 Mar 31;10:144. doi: 10.1186/1471-2164-10-144.

PMID:
19335913
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Functional divergence in the Arabidopsis beta-1,3-glucanase gene family inferred by phylogenetic reconstruction of expression states.

Doxey AC, Yaish MW, Moffatt BA, Griffith M, McConkey BJ.

Mol Biol Evol. 2007 Apr;24(4):1045-55. Epub 2007 Feb 1.

PMID:
17272678
[PubMed - indexed for MEDLINE]
Free Article
10.

Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins.

Freilich S, Massingham T, Bhattacharyya S, Ponsting H, Lyons PA, Freeman TC, Thornton JM.

Genome Biol. 2005;6(7):R56. Epub 2005 Jun 29.

PMID:
15998445
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes.

She X, Rohl CA, Castle JC, Kulkarni AV, Johnson JM, Chen R.

BMC Genomics. 2009 Jun 17;10:269. doi: 10.1186/1471-2164-10-269.

PMID:
19534766
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-wide analysis of factors regulating gene expression in liver.

Teufel A, Weinmann A, Krupp M, Budinger M, Galle PR.

Gene. 2007 Mar 15;389(2):114-21. Epub 2006 Nov 7.

PMID:
17174484
[PubMed - indexed for MEDLINE]
13.

Construction, visualisation, and clustering of transcription networks from microarray expression data.

Freeman TC, Goldovsky L, Brosch M, van Dongen S, Mazière P, Grocock RJ, Freilich S, Thornton J, Enright AJ.

PLoS Comput Biol. 2007 Oct;3(10):2032-42.

PMID:
17967053
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution.

Liao BY, Zhang J.

Mol Biol Evol. 2006 Jun;23(6):1119-28. Epub 2006 Mar 6.

PMID:
16520335
[PubMed - indexed for MEDLINE]
Free Article
15.

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416. doi: 10.1186/1471-2105-9-416.

PMID:
18837990
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Combining sequence and time series expression data to learn transcriptional modules.

Kundaje A, Middendorf M, Gao F, Wiggins C, Leslie C.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Jul-Sep;2(3):194-202.

PMID:
17044183
[PubMed - indexed for MEDLINE]
17.

All systems GO for understanding mouse gene function.

Holmes C, Brown SD.

J Biol. 2004;3(5):20. Epub 2004 Dec 17. Review.

PMID:
15610553
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Generation of a preliminary bovine gene atlas, using expression clustering to annotate gene function.

Keane OM, Maqbool N, McCulloch AF, McEwan JC, Dodds KG.

Genet Mol Res. 2009 Aug 25;8(3):1013-27. doi: 10.4238/vol8-3gmr594.

PMID:
19731199
[PubMed - indexed for MEDLINE]
Free Article
19.

A focused microarray approach to functional glycomics: transcriptional regulation of the glycome.

Comelli EM, Head SR, Gilmartin T, Whisenant T, Haslam SM, North SJ, Wong NK, Kudo T, Narimatsu H, Esko JD, Drickamer K, Dell A, Paulson JC.

Glycobiology. 2006 Feb;16(2):117-31. Epub 2005 Oct 19.

PMID:
16237199
[PubMed - indexed for MEDLINE]
Free Article
20.

Parallel genome-wide expression profiling of host and pathogen during soybean cyst nematode infection of soybean.

Ithal N, Recknor J, Nettleton D, Hearne L, Maier T, Baum TJ, Mitchum MG.

Mol Plant Microbe Interact. 2007 Mar;20(3):293-305.

PMID:
17378432
[PubMed - indexed for MEDLINE]
Free Article

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