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Items: 1 to 20 of 91

1.

Creation and implications of a phenome-genome network.

Butte AJ, Kohane IS.

Nat Biotechnol. 2006 Jan;24(1):55-62.

2.

Extraction of biological interaction networks from scientific literature.

Skusa A, Rüegg A, Köhler J.

Brief Bioinform. 2005 Sep;6(3):263-76. Review.

3.

Data mining and predictive modeling of biomolecular network from biomedical literature databases.

Hu X, Wu DD.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Apr-Jun;4(2):251-63.

PMID:
17473318
4.

Supervised inference of gene-regulatory networks.

To CC, Vohradsky J.

BMC Bioinformatics. 2008 Jan 4;9:2. doi: 10.1186/1471-2105-9-2.

5.

Joint learning of gene functions--a Bayesian network model approach.

Deng X, Geng H, Ali HH.

J Bioinform Comput Biol. 2006 Apr;4(2):217-39.

PMID:
16819781
6.

Automatic reconstruction of a bacterial regulatory network using Natural Language Processing.

Rodríguez-Penagos C, Salgado H, Martínez-Flores I, Collado-Vides J.

BMC Bioinformatics. 2007 Aug 7;8:293.

7.

An unsupervised approach to predict functional relations between genes based on expression data.

Altaf-Ul-Amin M, Katsuragi T, Sato T, Ono N, Kanaya S.

Biomed Res Int. 2014;2014:154594. doi: 10.1155/2014/154594. Epub 2014 Mar 31.

8.

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.

9.

Clustering biological annotations and gene expression data to identify putatively co-regulated biological processes.

Henegar C, Cancello R, Rome S, Vidal H, Clément K, Zucker JD.

J Bioinform Comput Biol. 2006 Aug;4(4):833-52.

PMID:
17007070
10.
11.

Discovering molecular pathways from protein interaction and gene expression data.

Segal E, Wang H, Koller D.

Bioinformatics. 2003;19 Suppl 1:i264-71.

12.

Combined application of behavior genetics and microarray analysis to identify regional expression themes and gene-behavior associations.

Letwin NE, Kafkafi N, Benjamini Y, Mayo C, Frank BC, Luu T, Lee NH, Elmer GI.

J Neurosci. 2006 May 17;26(20):5277-87.

13.

Reverse engineering gene regulatory networks.

Hartemink AJ.

Nat Biotechnol. 2005 May;23(5):554-5. No abstract available.

PMID:
15877071
14.

Identifying projected clusters from gene expression profiles.

Yip KY, Cheung DW, Ng MK, Cheung KH.

J Biomed Inform. 2004 Oct;37(5):345-57.

15.

NIBBS-search for fast and accurate prediction of phenotype-biased metabolic systems.

Schmidt MC, Rocha AM, Padmanabhan K, Shpanskaya Y, Banfield J, Scott K, Mihelcic JR, Samatova NF.

PLoS Comput Biol. 2012;8(5):e1002490. doi: 10.1371/journal.pcbi.1002490. Epub 2012 May 10.

16.

Annotating proteins by mining protein interaction networks.

Kirac M, Ozsoyoglu G, Yang J.

Bioinformatics. 2006 Jul 15;22(14):e260-70.

17.

Automatic extension of Gene Ontology with flexible identification of candidate terms.

Lee JB, Kim JJ, Park JC.

Bioinformatics. 2006 Mar 15;22(6):665-70. Epub 2006 Jan 21.

18.

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3. doi: 10.1186/1471-2105-9-S3-S3.

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