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Results: 1 to 20 of 148

1.

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data.

Katajamaa M, Miettinen J, Oresic M.

Bioinformatics. 2006 Mar 1;22(5):634-6. Epub 2006 Jan 10.

PMID:
16403790
[PubMed - indexed for MEDLINE]
Free Article
2.

PrepMS: TOF MS data graphical preprocessing tool.

Karpievitch YV, Hill EG, Smolka AJ, Morris JS, Coombes KR, Baggerly KA, Almeida JS.

Bioinformatics. 2007 Jan 15;23(2):264-5. Epub 2006 Nov 22.

PMID:
17121773
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Data pre-processing in liquid chromatography-mass spectrometry-based proteomics.

Zhang X, Asara JM, Adamec J, Ouzzani M, Elmagarmid AK.

Bioinformatics. 2005 Nov 1;21(21):4054-9. Epub 2005 Sep 8.

PMID:
16150809
[PubMed - indexed for MEDLINE]
Free Article
4.

Using the Proteomics Identifications Database (PRIDE).

Martens L, Jones P, Côté R.

Curr Protoc Bioinformatics. 2008 Mar;Chapter 13:Unit 13.8. doi: 10.1002/0471250953.bi1308s21.

PMID:
18428683
[PubMed - indexed for MEDLINE]
5.

MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data.

Pluskal T, Castillo S, Villar-Briones A, Oresic M.

BMC Bioinformatics. 2010 Jul 23;11:395. doi: 10.1186/1471-2105-11-395.

PMID:
20650010
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Using BiblioSpec for creating and searching tandem MS peptide libraries.

Frewen B, MacCoss MJ.

Curr Protoc Bioinformatics. 2007 Dec;Chapter 13:Unit 13.7. doi: 10.1002/0471250953.bi1307s20.

PMID:
18428681
[PubMed - indexed for MEDLINE]
7.

DBToolkit: processing protein databases for peptide-centric proteomics.

Martens L, Vandekerckhove J, Gevaert K.

Bioinformatics. 2005 Sep 1;21(17):3584-5. Epub 2005 Jul 19.

PMID:
16030071
[PubMed - indexed for MEDLINE]
Free Article
8.

MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences.

Barsnes H, Mikalsen SO, Eidhammer I.

BMC Bioinformatics. 2006 Jan 26;7:42.

PMID:
16438723
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting.

Samuelsson J, Dalevi D, Levander F, Rögnvaldsson T.

Bioinformatics. 2004 Dec 12;20(18):3628-35. Epub 2004 Aug 5.

PMID:
15297302
[PubMed - indexed for MEDLINE]
Free Article
10.

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.

Hartler J, Thallinger GG, Stocker G, Sturn A, Burkard TR, Körner E, Rader R, Schmidt A, Mechtler K, Trajanoski Z.

BMC Bioinformatics. 2007 Jun 13;8:197.

PMID:
17567892
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

MSDash: mass spectrometry database and search.

Wu Z, Lajoie G, Ma B.

Comput Syst Bioinformatics Conf. 2008;7:63-71.

PMID:
19642269
[PubMed - indexed for MEDLINE]
Free Article
12.

A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls.

Titulaer MK, Siccama I, Dekker LJ, van Rijswijk AL, Heeren RM, Sillevis Smitt PA, Luider TM.

BMC Bioinformatics. 2006 Sep 5;7:403.

PMID:
16953879
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

mMass data miner: an open source alternative for mass spectrometric data analysis.

Strohalm M, Hassman M, Kosata B, Kodícek M.

Rapid Commun Mass Spectrom. 2008;22(6):905-8. doi: 10.1002/rcm.3444. No abstract available.

PMID:
18293430
[PubMed - indexed for MEDLINE]
14.

pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry.

Wang LH, Li DQ, Fu Y, Wang HP, Zhang JF, Yuan ZF, Sun RX, Zeng R, He SM, Gao W.

Rapid Commun Mass Spectrom. 2007;21(18):2985-91.

PMID:
17702057
[PubMed - indexed for MEDLINE]
15.

ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats.

Falkner JA, Falkner JW, Andrews PC.

Bioinformatics. 2007 Jan 15;23(2):262-3. Epub 2006 Nov 22.

PMID:
17121776
[PubMed - indexed for MEDLINE]
Free Article
16.

Validation of tandem mass spectrometry database search results using DTASelect.

Cociorva D, L Tabb D, Yates JR.

Curr Protoc Bioinformatics. 2007 Jan;Chapter 13:Unit 13.4. doi: 10.1002/0471250953.bi1304s16.

PMID:
18428785
[PubMed - indexed for MEDLINE]
17.

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.

Hummel J, Niemann M, Wienkoop S, Schulze W, Steinhauser D, Selbig J, Walther D, Weckwerth W.

BMC Bioinformatics. 2007 Jun 23;8:216.

PMID:
17587460
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Biskit--a software platform for structural bioinformatics.

Grünberg R, Nilges M, Leckner J.

Bioinformatics. 2007 Mar 15;23(6):769-70. Epub 2007 Jan 18.

PMID:
17237072
[PubMed - indexed for MEDLINE]
Free Article
19.

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.

Li D, Fu Y, Sun R, Ling CX, Wei Y, Zhou H, Zeng R, Yang Q, He S, Gao W.

Bioinformatics. 2005 Jul 1;21(13):3049-50. Epub 2005 Apr 7.

PMID:
15817687
[PubMed - indexed for MEDLINE]
Free Article
20.

BRAGI: linking and visualization of database information in a 3D viewer and modeling tool.

Reichelt J, Dieterich G, Kvesic M, Schomburg D, Heinz DW.

Bioinformatics. 2005 Apr 1;21(7):1291-3. Epub 2004 Nov 16.

PMID:
15546941
[PubMed - indexed for MEDLINE]
Free Article

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